1 Response_reg#1
5-114 aa · 110 aa · 20.6% of protein
Raw token
Response_reg:5:2.73e-26:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS08565
Response regulator, unclassified
Agathobacter rectalis · GCF_003438175
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS08565Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage172 / 534 aa (32.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
446-477 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:446:0.00000023:477:32:423 HTH_AraC#3
498-527 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:498:0.0000000241:527:30:42- Raw architecture: Response_reg:5:2.73e-26:114:110:111#HTH_AraC:446:0.00000023:477:32:42#HTH_AraC:498:0.0000000241:527:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000011.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79042-82420Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_08565RefSeq proteinWP_117715025.1
Context group ID
GCF_003438175::NZ_QSTI01000011.1::G00007Context members
DXC13_RS08565DXC13_RS08570
Partner locus tags
DXC13_RS08565DXC13_RS08570
Partner old locus tags
DXC13_08565DXC13_08570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117715025.1Primary protein accession used for annex mappings.
UniProt accessionA0A395ZI98Primary UniProt accession resolved in the annex database.
UniProt IDA0A395ZI98_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS08565Primary locus identifier stored in the genes table.
Old locus tagDXC13_08565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000011.1Sequence record reported by the local genomic context database.
Genomic interval79 042-80 646 nt1 605 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 042-82 420 ntGCF_003438175::NZ_QSTI01000011.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000011.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000011.1All displayed genes belong to this local TCS context.
Neighborhood span79 042-82 420 nt3 379 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 042 nt82 420 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS08565GCF_003438175#DXC13_RS08565
RRunclassifiedCurrent focus
79 042-80 646 nt · Forward (+)
DXC13_RS08570GCF_003438175#DXC13_RS08570
HKClassic
80 627-82 420 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS08565The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103609
Simplified PFAM architecture for RROC_0103609
PFAM domain coverage: 321 / 534 aa (60.1%)
1 aa534 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-115] | GGDEF_2[158-289] | HTH_18[450-527]
- Domain count: 3
- Matched identifier: RROC_0103609
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; GGDEF_2 158-289 ; GGDEF_2 158-289 ; HTH_18 450-527 ; HTH_18 450-527
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS08565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key