1 Hpt#1
5-98 aa · 94 aa · 13.3% of protein
Raw token
Hpt:5:1.45e-17:98:94:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS00340
Histidine kinase, CheA
Agathobacter rectalis · GCF_003438175
ClassHKTypeCheALength706 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS00340Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length706 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 706 aa (60.3%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa706 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
324-387 aa · 64 aa · 9.1% of protein
Raw token
H-kinase_dim:324:0.00000000000000106:387:67:673 HATPase_c#3
435-574 aa · 140 aa · 19.8% of protein
Raw token
HATPase_c:435:3.62e-16:574:140:1094 CheW#4
579-706 aa · 128 aa · 18.1% of protein
Raw token
CheW:579:2.22e-30:706:135:138- Raw architecture: Hpt:5:1.45e-17:98:94:84#H-kinase_dim:324:0.00000000000000106:387:67:67#HATPase_c:435:3.62e-16:574:140:109#CheW:579:2.22e-30:706:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73093-76276Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_00340RefSeq proteinWP_117714149.1
Context group ID
GCF_003438175::NZ_QSTI01000001.1::G00001Context members
DXC13_RS00335DXC13_RS00340
Partner locus tags
DXC13_RS00335DXC13_RS00340
Partner old locus tags
DXC13_00335DXC13_00340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117714149.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4XE04Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4XE04_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS00340Primary locus identifier stored in the genes table.
Old locus tagDXC13_00340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000001.1Sequence record reported by the local genomic context database.
Genomic interval74 156-76 276 nt2 121 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 093-76 276 ntGCF_003438175::NZ_QSTI01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span73 093-76 276 nt3 184 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 093 nt76 276 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS00335GCF_003438175#DXC13_RS00335
RRCheB
73 093-74 154 nt · Forward (+)
DXC13_RS00340GCF_003438175#DXC13_RS00340
HKCheACurrent focus
74 156-76 276 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438175#DXC13_RS00340The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0757809
Simplified PFAM architecture for HKOC_0757809
PFAM domain coverage: 502 / 706 aa (71.1%)
1 aa706 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[5-97] | P2[183-260] | H-kinase_dim[323-387] | HATPase_c[436-574] | CheW[579-705]
- Domain count: 5
- Matched identifier: HKOC_0757809
- Positioned domains: Hpt 5-97 ; P2 183-260 ; H-kinase_dim 323-387 ; HATPase_c 436-574 ; CheW 579-705
Cluster members and taxonomy
Representative gene: GCF_003438175#DXC13_RS00340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key