1 HAMP#1
75-139 aa · 65 aa · 18.1% of protein
Raw token
HAMP:75:0.000000447:139:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC13_RS04330
Histidine kinase, Classic
Agathobacter rectalis · GCF_003438175
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003438175#DXC13_RS04330Stable P2CS identifier used across views.
GenomeGCF_003438175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 360 aa (61.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
152-213 aa · 62 aa · 17.2% of protein
Raw token
HisKA:152:0.0000000119:213:63:643 HATPase_c#3
263-357 aa · 95 aa · 26.4% of protein
Raw token
HATPase_c:263:9.66e-17:357:97:109- Raw architecture: HAMP:75:0.000000447:139:66:69#HisKA:152:0.0000000119:213:63:64#HATPase_c:263:9.66e-17:357:97:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003438175::NZ_QSTI01000005.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4031-5796Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC13_04330RefSeq proteinWP_005361175.1
Context group ID
GCF_003438175::NZ_QSTI01000005.1::G00043Context members
DXC13_RS04325DXC13_RS04330
Partner locus tags
DXC13_RS04325DXC13_RS04330
Partner old locus tags
DXC13_04325DXC13_04330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005361175.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4XA14Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4XA14_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC13_RS04330Primary locus identifier stored in the genes table.
Old locus tagDXC13_04330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSTI01000005.1Sequence record reported by the local genomic context database.
Genomic interval4 714-5 796 nt1 083 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 031-5 796 ntGCF_003438175::NZ_QSTI01000005.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003438175::NZ_QSTI01000005.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSTI01000005.1All displayed genes belong to this local TCS context.
Neighborhood span4 031-5 796 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 031 nt5 796 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC13_RS04325GCF_003438175#DXC13_RS04325
RROmpR
4 031-4 708 nt · Forward (+)
DXC13_RS04330GCF_003438175#DXC13_RS04330
HKClassicCurrent focus
4 714-5 796 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153885#EUBVEN_RS05915Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2711971
Simplified PFAM architecture for HKOC_2711971
PFAM domain coverage: 201 / 366 aa (54.9%)
1 aa366 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[101-146] | HisKA[159-219] | HATPase_c[268-361]
- Domain count: 3
- Matched identifier: HKOC_2711971
- Positioned domains: HAMP 101-146 ; HisKA 159-219 ; HATPase_c 268-361
Cluster members and taxonomy
Representative gene: GCF_000153885#EUBVEN_RS05915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003438175
AssemblyASM343817v1 · Scaffoldhaploid
Genome composition3 350 682 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 94 · HK 41 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key