1 HAMP#1
81-145 aa · 65 aa · 17.8% of protein
Raw token
HAMP:81:0.000000471:145:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EUBVEN_RS05915
Histidine kinase, Classic
Eubacterium ventriosum ATCC 27560 · GCF_000153885
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000153885#EUBVEN_RS05915Stable P2CS identifier used across views.
GenomeGCF_000153885Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 366 aa (60.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation3 items
2 HisKA#2
158-219 aa · 62 aa · 16.9% of protein
Raw token
HisKA:158:0.0000000139:219:63:643 HATPase_c#3
269-363 aa · 95 aa · 26.0% of protein
Raw token
HATPase_c:269:9.12e-17:363:97:109- Raw architecture: HAMP:81:0.000000471:145:66:69#HisKA:158:0.0000000139:219:63:64#HATPase_c:269:9.12e-17:363:97:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000153885::NZ_DS264271.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85285-87050Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEUBVEN_01440RefSeq proteinWP_242652124.1
Context group ID
GCF_000153885::NZ_DS264271.1::G00019Context members
EUBVEN_RS05910EUBVEN_RS05915
Partner locus tags
EUBVEN_RS05910EUBVEN_RS05915
Partner old locus tags
EUBVEN_01439EUBVEN_01440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242652124.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEUBVEN_RS05915Primary locus identifier stored in the genes table.
Old locus tagEUBVEN_01440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS264271.1Sequence record reported by the local genomic context database.
Genomic interval85 950-87 050 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 285-87 050 ntGCF_000153885::NZ_DS264271.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000153885::NZ_DS264271.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS264271.1All displayed genes belong to this local TCS context.
Neighborhood span85 285-87 050 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 285 nt87 050 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EUBVEN_RS05910GCF_000153885#EUBVEN_RS05910
RROmpR
85 285-85 962 nt · Forward (+)
EUBVEN_RS05915GCF_000153885#EUBVEN_RS05915
HKClassicCurrent focus
85 950-87 050 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153885#EUBVEN_RS05915The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2711971
Simplified PFAM architecture for HKOC_2711971
PFAM domain coverage: 201 / 366 aa (54.9%)
1 aa366 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[101-146] | HisKA[159-219] | HATPase_c[268-361]
- Domain count: 3
- Matched identifier: HKOC_2711971
- Positioned domains: HAMP 101-146 ; HisKA 159-219 ; HATPase_c 268-361
Cluster members and taxonomy
Representative gene: GCF_000153885#EUBVEN_RS05915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 463 · GCF_000153885
AssemblyASM15388v1 · Scaffoldhaploid
Genome composition2 870 795 bp · 35,0% GCEubacterium ventriosum ATCC 27560
Signal transduction countsGenes 58 · HK 26 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key