1 HAMP#1
282-352 aa · 71 aa · 12.3% of protein
Raw token
HAMP:282:0.00000000184:352:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS14315
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS14315Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage264 / 577 aa (45.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 His_kinase#2
367-446 aa · 80 aa · 13.9% of protein
Raw token
His_kinase:367:7.17e-32:446:80:803 HATPase_c#3
462-574 aa · 113 aa · 19.6% of protein
Raw token
HATPase_c:462:0.00000000000122:574:113:109- Raw architecture: HAMP:282:0.00000000184:352:72:69#His_kinase:367:7.17e-32:446:80:80#HATPase_c:462:0.00000000000122:574:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000017.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79895-83201Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_14325RefSeq proteinWP_117628606.1
Context group ID
GCF_003437665::NZ_QSRF01000017.1::G00020Context members
DXC87_RS14315DXC87_RS14320
Partner locus tags
DXC87_RS14315DXC87_RS14320
Partner old locus tags
DXC87_14325DXC87_14330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117628606.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS14315Primary locus identifier stored in the genes table.
Old locus tagDXC87_14325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000017.1Sequence record reported by the local genomic context database.
Genomic interval79 895-81 628 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 895-83 201 ntGCF_003437665::NZ_QSRF01000017.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000017.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000017.1All displayed genes belong to this local TCS context.
Neighborhood span79 895-83 201 nt3 307 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 895 nt83 201 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS14315GCF_003437665#DXC87_RS14315
HKClassicCurrent focus
79 895-81 628 nt · Forward (+)
DXC87_RS14320GCF_003437665#DXC87_RS14320
RRunclassified
81 642-83 201 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS14315The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1178462
Simplified PFAM architecture for HKOC_1178462
PFAM domain coverage: 194 / 577 aa (33.6%)
1 aa577 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[367-446] | HATPase_c[462-575]
- Domain count: 2
- Matched identifier: HKOC_1178462
- Positioned domains: His_kinase 367-446 ; HATPase_c 462-575
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS14315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key