1 SBP_bac_3#1
84-301 aa · 218 aa · 22.5% of protein
Raw token
SBP_bac_3:84:1.52e-27:301:236:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS00110
Histidine kinase, Hybrid
Blautia obeum · GCF_003437665
ClassHKTypeHybridLength970 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437665#DXC87_RS00110Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length970 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage719 / 970 aa (74.1%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa970 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
323-520 aa · 198 aa · 20.4% of protein
Raw token
SBP_bac_3:323:3.13e-18:520:213:2243 HisKA#3
594-659 aa · 66 aa · 6.8% of protein
Raw token
HisKA:594:3.43e-18:659:66:644 HATPase_c#4
706-824 aa · 119 aa · 12.3% of protein
Raw token
HATPase_c:706:1.61e-28:824:119:1095 Response_reg#5
847-964 aa · 118 aa · 12.2% of protein
Raw token
Response_reg:847:1.55e-31:964:118:111- Raw architecture: SBP_bac_3:84:1.52e-27:301:236:224#SBP_bac_3:323:3.13e-18:520:213:224#HisKA:594:3.43e-18:659:66:64#HATPase_c:706:1.61e-28:824:119:109#Response_reg:847:1.55e-31:964:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437665::NZ_QSRF01000001.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span21931-24843Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_00110RefSeq proteinWP_117627528.1
Context group ID
GCF_003437665::NZ_QSRF01000001.1::G00001Context members
DXC87_RS00110
Partner locus tags
DXC87_RS00110
Partner old locus tags
DXC87_00110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117627528.1Primary protein accession used for annex mappings.
UniProt accessionA0A395XB06Primary UniProt accession resolved in the annex database.
UniProt IDA0A395XB06_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS00110Primary locus identifier stored in the genes table.
Old locus tagDXC87_00110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000001.1Sequence record reported by the local genomic context database.
Genomic interval21 931-24 843 nt2 913 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 931-24 843 ntGCF_003437665::NZ_QSRF01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span21 931-24 843 nt2 913 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 931 nt24 843 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC87_RS00110GCF_003437665#DXC87_RS00110
HKHybridCurrent focus
21 931-24 843 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS00110The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0312188
Simplified PFAM architecture for HKOC_0312188
PFAM domain coverage: 500 / 970 aa (51.5%)
1 aa970 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[88-287] | HisKA[594-659] | HATPase_c[707-822] | Response_reg[847-964]
- Domain count: 4
- Matched identifier: HKOC_0312188
- Positioned domains: SBP_bac_3 88-287 ; HisKA 594-659 ; HATPase_c 707-822 ; Response_reg 847-964
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS00110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key