1 HisKA_3#1
172-236 aa · 65 aa · 18.0% of protein
Raw token
HisKA_3:172:0.0000000000000669:236:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS09420
Histidine kinase, Classic
Blautia obeum · GCF_003437665
ClassHKTypeClassicLength362 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS09420Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 362 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
276-359 aa · 84 aa · 23.2% of protein
Raw token
HATPase_c:276:0.000000000034:359:101:109- Raw architecture: HisKA_3:172:0.0000000000000669:236:67:68#HATPase_c:276:0.000000000034:359:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000009.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80943-82677Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_09425RefSeq proteinWP_117628194.1
Context group ID
GCF_003437665::NZ_QSRF01000009.1::G00050Context members
DXC87_RS09420DXC87_RS09425
Partner locus tags
DXC87_RS09420DXC87_RS09425
Partner old locus tags
DXC87_09425DXC87_09430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117628194.1Primary protein accession used for annex mappings.
UniProt accessionA0A395X3U5Primary UniProt accession resolved in the annex database.
UniProt IDA0A395X3U5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS09420Primary locus identifier stored in the genes table.
Old locus tagDXC87_09425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000009.1Sequence record reported by the local genomic context database.
Genomic interval80 943-82 031 nt1 089 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 943-82 677 ntGCF_003437665::NZ_QSRF01000009.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000009.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000009.1All displayed genes belong to this local TCS context.
Neighborhood span80 943-82 677 nt1 735 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 943 nt82 677 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS09420GCF_003437665#DXC87_RS09420
HKClassicCurrent focus
80 943-82 031 nt · Forward (+)
DXC87_RS09425GCF_003437665#DXC87_RS09425
RRNarL
82 057-82 677 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465235#DWW21_RS14530Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2677441
Simplified PFAM architecture for HKOC_2677441
PFAM domain coverage: 148 / 371 aa (39.9%)
1 aa371 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[181-244] | HATPase_c[284-367]
- Domain count: 2
- Matched identifier: HKOC_2677441
- Positioned domains: HisKA_3 181-244 ; HATPase_c 284-367
Cluster members and taxonomy
Representative gene: GCF_003465235#DWW21_RS14530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key