1 Response_reg#1
3-113 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:3:1.1e-40:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC87_RS07290
Response regulator OmpR family
Blautia obeum · GCF_003437665
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437665#DXC87_RS07290Stable P2CS identifier used across views.
GenomeGCF_003437665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 225 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-220 aa · 75 aa · 33.3% of protein
Raw token
Trans_reg_C:146:1.02e-25:220:77:77- Raw architecture: Response_reg:3:1.1e-40:113:111:111#Trans_reg_C:146:1.02e-25:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437665::NZ_QSRF01000006.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113248-115112Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC87_07290RefSeq proteinWP_117628058.1
Context group ID
GCF_003437665::NZ_QSRF01000006.1::G00040Context members
DXC87_RS07285DXC87_RS07290
Partner locus tags
DXC87_RS07285DXC87_RS07290
Partner old locus tags
DXC87_07285DXC87_07290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117628058.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC87_RS07290Primary locus identifier stored in the genes table.
Old locus tagDXC87_07290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRF01000006.1Sequence record reported by the local genomic context database.
Genomic interval114 435-115 112 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 248-115 112 ntGCF_003437665::NZ_QSRF01000006.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437665::NZ_QSRF01000006.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRF01000006.1All displayed genes belong to this local TCS context.
Neighborhood span113 248-115 112 nt1 865 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 248 nt115 112 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC87_RS07285GCF_003437665#DXC87_RS07285
HKClassic
113 248-114 438 nt · Reverse (-)
DXC87_RS07290GCF_003437665#DXC87_RS07290
RROmpRCurrent focus
114 435-115 112 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437665#DXC87_RS07290The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1479844
Simplified PFAM architecture for RROC_1479844
PFAM domain coverage: 186 / 225 aa (82.7%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1479844
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_003437665#DXC87_RS07290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003437665
AssemblyASM343766v1 · Scaffoldhaploid
Genome composition3 620 882 bp · 42,0% GCBlautia obeum
Signal transduction countsGenes 89 · HK 47 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key