1 dCache_1#1
204-313 aa · 110 aa · 16.8% of protein
Raw token
dCache_1:204:0.00000003:313:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS08835
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength653 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS08835Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length653 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage363 / 653 aa (55.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa653 aa
Domain-by-domain annotation4 items
2 HAMP#2
337-402 aa · 66 aa · 10.1% of protein
Raw token
HAMP:337:0.0000000000133:402:66:693 His_kinase#3
427-508 aa · 82 aa · 12.6% of protein
Raw token
His_kinase:427:5.17e-24:508:82:804 HATPase_c#4
528-632 aa · 105 aa · 16.1% of protein
Raw token
HATPase_c:528:0.00000000000000166:632:108:109- Raw architecture: dCache_1:204:0.00000003:313:113:195#HAMP:337:0.0000000000133:402:66:69#His_kinase:427:5.17e-24:508:82:80#HATPase_c:528:0.00000000000000166:632:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000004.1::G00117
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span134395-137854Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_08830RefSeq proteinWP_181987896.1
Context group ID
GCF_003437645::NZ_QSRE01000004.1::G00117Context members
DXC88_RS08830DXC88_RS08835
Partner locus tags
DXC88_RS08830DXC88_RS08835
Partner old locus tags
DXC88_08825DXC88_08830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_181987896.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3E764Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3E764_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS08835Primary locus identifier stored in the genes table.
Old locus tagDXC88_08830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000004.1Sequence record reported by the local genomic context database.
Genomic interval135 893-137 854 nt1 962 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span134 395-137 854 ntGCF_003437645::NZ_QSRE01000004.1::G00117
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000004.1::G00117Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000004.1All displayed genes belong to this local TCS context.
Neighborhood span134 395-137 854 nt3 460 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 395 nt137 854 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS08830GCF_003437645#DXC88_RS08830
RRunclassified
134 395-135 921 nt · Reverse (-)
DXC88_RS08835GCF_003437645#DXC88_RS08835
HKClassicCurrent focus
135 893-137 854 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS08835The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0890152
Simplified PFAM architecture for HKOC_0890152
PFAM domain coverage: 489 / 653 aa (74.9%)
1 aa653 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[55-313] | HAMP[358-402] | His_kinase[427-507] | HATPase_c[528-631]
- Domain count: 4
- Matched identifier: HKOC_0890152
- Positioned domains: dCache_1 55-313 ; HAMP 358-402 ; His_kinase 427-507 ; HATPase_c 528-631
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS08835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key