1 dCache_1#1
41-253 aa · 213 aa · 36.9% of protein
Raw token
dCache_1:41:0.0000814:253:219:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS08115
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS08115Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage400 / 578 aa (69.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa578 aa
Domain-by-domain annotation3 items
2 His_kinase#2
359-439 aa · 81 aa · 14.0% of protein
Raw token
His_kinase:359:2.6e-24:439:82:803 HATPase_c#3
459-564 aa · 106 aa · 18.3% of protein
Raw token
HATPase_c:459:0.000000000000181:564:109:109- Raw architecture: dCache_1:41:0.0000814:253:219:195#His_kinase:359:2.6e-24:439:82:80#HATPase_c:459:0.000000000000181:564:109:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000003.1::G00099
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span378969-381459Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_08110RefSeq proteinWP_002603233.1
Context group ID
GCF_003437645::NZ_QSRE01000003.1::G00099Context members
DXC88_RS08115DXC88_RS08120
Partner locus tags
DXC88_RS08115DXC88_RS08120
Partner old locus tags
DXC88_08110DXC88_08115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002603233.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS08115Primary locus identifier stored in the genes table.
Old locus tagDXC88_08110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000003.1Sequence record reported by the local genomic context database.
Genomic interval378 969-380 705 nt1 737 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span378 969-381 459 ntGCF_003437645::NZ_QSRE01000003.1::G00099
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000003.1::G00099Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000003.1All displayed genes belong to this local TCS context.
Neighborhood span378 969-381 459 nt2 491 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
378 969 nt381 459 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS08115GCF_003437645#DXC88_RS08115
HKClassicCurrent focus
378 969-380 705 nt · Reverse (-)
DXC88_RS08120GCF_003437645#DXC88_RS08120
RRunclassified
380 686-381 459 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS17230Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1172418
Simplified PFAM architecture for HKOC_1172418
PFAM domain coverage: 184 / 578 aa (31.8%)
1 aa578 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[360-437] | HATPase_c[458-563]
- Domain count: 2
- Matched identifier: HKOC_1172418
- Positioned domains: His_kinase 360-437 ; HATPase_c 458-563
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS17230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key