1 HAMP#1
306-375 aa · 70 aa · 11.7% of protein
Raw token
HAMP:306:0.000000000000448:375:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS07455
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength598 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS07455Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length598 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 598 aa (40.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa598 aa
Domain-by-domain annotation3 items
2 His_kinase#2
392-463 aa · 72 aa · 12.0% of protein
Raw token
His_kinase:392:2.17e-28:463:72:803 HATPase_c#3
485-583 aa · 99 aa · 16.6% of protein
Raw token
HATPase_c:485:0.000000047:583:109:109- Raw architecture: HAMP:306:0.000000000000448:375:70:69#His_kinase:392:2.17e-28:463:72:80#HATPase_c:485:0.000000047:583:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000003.1::G00098
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span235500-238014Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_07455RefSeq proteinWP_002603416.1
Context group ID
GCF_003437645::NZ_QSRE01000003.1::G00098Context members
DXC88_RS07450DXC88_RS07455
Partner locus tags
DXC88_RS07450DXC88_RS07455
Partner old locus tags
DXC88_07450DXC88_07455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002603416.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PBJ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PBJ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS07455Primary locus identifier stored in the genes table.
Old locus tagDXC88_07455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000003.1Sequence record reported by the local genomic context database.
Genomic interval236 218-238 014 nt1 797 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span235 500-238 014 ntGCF_003437645::NZ_QSRE01000003.1::G00098
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000003.1::G00098Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000003.1All displayed genes belong to this local TCS context.
Neighborhood span235 500-238 014 nt2 515 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
235 500 nt238 014 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS07450GCF_003437645#DXC88_RS07450
RRunclassified
235 500-236 243 nt · Reverse (-)
DXC88_RS07455GCF_003437645#DXC88_RS07455
HKClassicCurrent focus
236 218-238 014 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS18125Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1061836
Simplified PFAM architecture for HKOC_1061836
PFAM domain coverage: 223 / 598 aa (37.3%)
1 aa598 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[323-374] | His_kinase[392-464] | HATPase_c[486-583]
- Domain count: 3
- Matched identifier: HKOC_1061836
- Positioned domains: HAMP 323-374 ; His_kinase 392-464 ; HATPase_c 486-583
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS18125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key