1 Response_reg#1
4-121 aa · 118 aa · 47.8% of protein
Raw token
Response_reg:4:0.0000000000000176:121:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS05085
Response regulator LytTR family
Hungatella hathewayi · GCF_003437645
ClassRRTypeLytTRLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437645#DXC88_RS05085Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 247 aa (85.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 LytTR#2
152-244 aa · 93 aa · 37.7% of protein
Raw token
LytTR:152:0.0000000000579:244:97:98- Raw architecture: Response_reg:4:0.0000000000000176:121:119:111#LytTR:152:0.0000000000579:244:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437645::NZ_QSRE01000002.1::G00072
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span299283-300026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_05085RefSeq proteinWP_117630655.1
Context group ID
GCF_003437645::NZ_QSRE01000002.1::G00072Context members
DXC88_RS05085
Partner locus tags
DXC88_RS05085
Partner old locus tags
DXC88_05085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630655.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P647Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P647_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS05085Primary locus identifier stored in the genes table.
Old locus tagDXC88_05085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000002.1Sequence record reported by the local genomic context database.
Genomic interval299 283-300 026 nt744 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span299 283-300 026 ntGCF_003437645::NZ_QSRE01000002.1::G00072
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000002.1::G00072Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000002.1All displayed genes belong to this local TCS context.
Neighborhood span299 283-300 026 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
299 283 nt300 026 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC88_RS05085GCF_003437645#DXC88_RS05085
RRLytTRCurrent focus
299 283-300 026 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS05085The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0759512
Simplified PFAM architecture for RROC_0759512
PFAM domain coverage: 205 / 247 aa (83.0%)
1 aa247 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[152-243]
- Domain count: 2
- Matched identifier: RROC_0759512
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 152-243 ; LytTR 152-243
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS05085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key