1 HAMP#1
290-356 aa · 67 aa · 11.6% of protein
Raw token
HAMP:290:0.0000000000959:356:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS04320
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS04320Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 576 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-450 aa · 79 aa · 13.7% of protein
Raw token
His_kinase:372:2.23e-23:450:79:803 HATPase_c#3
469-571 aa · 103 aa · 17.9% of protein
Raw token
HATPase_c:469:0.00000000000000647:571:112:109- Raw architecture: HAMP:290:0.0000000000959:356:67:69#His_kinase:372:2.23e-23:450:79:80#HATPase_c:469:0.00000000000000647:571:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000002.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113388-116605Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_04320RefSeq proteinWP_117630578.1
Context group ID
GCF_003437645::NZ_QSRE01000002.1::G00069Context members
DXC88_RS04320DXC88_RS04325
Partner locus tags
DXC88_RS04320DXC88_RS04325
Partner old locus tags
DXC88_04320DXC88_04325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630578.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NZU3Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NZU3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS04320Primary locus identifier stored in the genes table.
Old locus tagDXC88_04320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000002.1Sequence record reported by the local genomic context database.
Genomic interval113 388-115 118 nt1 731 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 388-116 605 ntGCF_003437645::NZ_QSRE01000002.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000002.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000002.1All displayed genes belong to this local TCS context.
Neighborhood span113 388-116 605 nt3 218 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 388 nt116 605 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS04320GCF_003437645#DXC88_RS04320
HKClassicCurrent focus
113 388-115 118 nt · Reverse (-)
DXC88_RS04325GCF_003437645#DXC88_RS04325
RRunclassified
115 118-116 605 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS04320The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1184227
Simplified PFAM architecture for HKOC_1184227
PFAM domain coverage: 231 / 576 aa (40.1%)
1 aa576 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[305-355] | His_kinase[372-448] | HATPase_c[469-571]
- Domain count: 3
- Matched identifier: HKOC_1184227
- Positioned domains: HAMP 305-355 ; His_kinase 372-448 ; HATPase_c 469-571
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS04320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key