1 Response_reg#1
4-117 aa · 114 aa · 40.0% of protein
Raw token
Response_reg:4:1.85e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS04045
Response regulator, unclassified
Hungatella hathewayi · GCF_003437645
ClassRRTypeunclassifiedLength285 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS04045Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length285 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 285 aa (66.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa285 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
188-229 aa · 42 aa · 14.7% of protein
Raw token
HTH_AraC:188:0.000000805:229:42:423 HTH_AraC#3
246-278 aa · 33 aa · 11.6% of protein
Raw token
HTH_AraC:246:0.0000000201:278:33:42- Raw architecture: Response_reg:4:1.85e-29:117:114:111#HTH_AraC:188:0.000000805:229:42:42#HTH_AraC:246:0.0000000201:278:33:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000002.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48744-51088Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_04045RefSeq proteinWP_117630547.1
Context group ID
GCF_003437645::NZ_QSRE01000002.1::G00066Context members
DXC88_RS04040DXC88_RS04045
Partner locus tags
DXC88_RS04040DXC88_RS04045
Partner old locus tags
DXC88_04040DXC88_04045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630547.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NZY0Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NZY0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS04045Primary locus identifier stored in the genes table.
Old locus tagDXC88_04045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000002.1Sequence record reported by the local genomic context database.
Genomic interval50 231-51 088 nt858 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 744-51 088 ntGCF_003437645::NZ_QSRE01000002.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000002.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000002.1All displayed genes belong to this local TCS context.
Neighborhood span48 744-51 088 nt2 345 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 744 nt51 088 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS04040GCF_003437645#DXC88_RS04040
HKClassic
48 744-50 228 nt · Forward (+)
DXC88_RS04045GCF_003437645#DXC88_RS04045
RRunclassifiedCurrent focus
50 231-51 088 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS04045The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0591452
Simplified PFAM architecture for RROC_0591452
PFAM domain coverage: 190 / 285 aa (66.7%)
1 aa285 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[201-278]
- Domain count: 2
- Matched identifier: RROC_0591452
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 201-278 ; HTH_18 201-278
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS04045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key