1 Response_reg#1
4-110 aa · 107 aa · 20.9% of protein
Raw token
Response_reg:4:2.44e-29:110:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS03705
Response regulator, unclassified
Hungatella hathewayi · GCF_003437645
ClassRRTypeunclassifiedLength511 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS03705Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length511 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 511 aa (35.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa511 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
412-447 aa · 36 aa · 7.0% of protein
Raw token
HTH_AraC:412:0.000000788:447:36:423 HTH_AraC#3
466-503 aa · 38 aa · 7.4% of protein
Raw token
HTH_AraC:466:0.000000697:503:38:42- Raw architecture: Response_reg:4:2.44e-29:110:107:111#HTH_AraC:412:0.000000788:447:36:42#HTH_AraC:466:0.000000697:503:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span833347-836512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_03705RefSeq proteinWP_002599831.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00030Context members
DXC88_RS03705DXC88_RS03710
Partner locus tags
DXC88_RS03705DXC88_RS03710
Partner old locus tags
DXC88_03705DXC88_03710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002599831.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS03705Primary locus identifier stored in the genes table.
Old locus tagDXC88_03705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval833 347-834 882 nt1 536 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span833 347-836 512 ntGCF_003437645::NZ_QSRE01000001.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span833 347-836 512 nt3 166 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
833 347 nt836 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS03705GCF_003437645#DXC88_RS03705
RRunclassifiedCurrent focus
833 347-834 882 nt · Forward (+)
DXC88_RS03710GCF_003437645#DXC88_RS03710
HKClassic
834 872-836 512 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS00090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0144977
Simplified PFAM architecture for RROC_0144977
PFAM domain coverage: 190 / 511 aa (37.2%)
1 aa511 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[426-505]
- Domain count: 2
- Matched identifier: RROC_0144977
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_18 426-505 ; HTH_18 426-505
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS00090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key