1 PAS_3#1
147-226 aa · 80 aa · 6.3% of protein
Raw token
PAS_3:147:0.00000000000000813:226:80:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS03495
Histidine kinase, Hybrid
Hungatella hathewayi · GCF_003437645
ClassHKTypeHybridLength1277 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437645#DXC88_RS03495Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1277 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage447 / 1277 aa (35.0%)Merged over positioned domains only.
Domain description2 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1277 aa
Domain-by-domain annotation5 items
2 PAS_3#2
389-455 aa · 67 aa · 5.2% of protein
Raw token
PAS_3:389:0.0000000123:455:67:893 HisKA#3
899-964 aa · 66 aa · 5.2% of protein
Raw token
HisKA:899:0.00000000000000161:964:66:644 HATPase_c#4
1012-1129 aa · 118 aa · 9.2% of protein
Raw token
HATPase_c:1012:2.68e-31:1129:118:1095 Response_reg#5
1158-1273 aa · 116 aa · 9.1% of protein
Raw token
Response_reg:1158:1.01e-26:1273:116:111- Raw architecture: PAS_3:147:0.00000000000000813:226:80:89#PAS_3:389:0.0000000123:455:67:89#HisKA:899:0.00000000000000161:964:66:64#HATPase_c:1012:2.68e-31:1129:118:109#Response_reg:1158:1.01e-26:1273:116:111
- Domain description: 2 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437645::NZ_QSRE01000001.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span786748-790581Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_03495RefSeq proteinWP_117630455.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00028Context members
DXC88_RS03495
Partner locus tags
DXC88_RS03495
Partner old locus tags
DXC88_03495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630455.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PF22Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PF22_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS03495Primary locus identifier stored in the genes table.
Old locus tagDXC88_03495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval786 748-790 581 nt3 834 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span786 748-790 581 ntGCF_003437645::NZ_QSRE01000001.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span786 748-790 581 nt3 834 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
786 748 nt790 581 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC88_RS03495GCF_003437645#DXC88_RS03495
HKHybridCurrent focus
786 748-790 581 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS03495The current gene is the representative for this cluster.
PFAM architecturePAS_8 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0129665
Simplified PFAM architecture for HKOC_0129665
PFAM domain coverage: 482 / 1277 aa (37.7%)
1 aa1277 aa
PAS_8PAS_3PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_8 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_8[11-41] | PAS_3[148-226] | PAS_3[389-462] | HisKA[899-964] | HATPase_c[1013-1128] | Response_reg[1158-1273]
- Domain count: 6
- Matched identifier: HKOC_0129665
- Positioned domains: PAS_8 11-41 ; PAS_3 148-226 ; PAS_3 389-462 ; HisKA 899-964 ; HATPase_c 1013-1128 ; Response_reg 1158-1273
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS03495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key