1 PAS_3#1
23-108 aa · 86 aa · 9.5% of protein
Raw token
PAS_3:23:0.00000000039:108:86:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS03480
Histidine kinase, Hybrid
Hungatella hathewayi · GCF_003437645
ClassHKTypeHybridLength905 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437645#DXC88_RS03480Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_3PAS_9HisKAHATPase_cResponse_reg
Protein length905 aaLength used to scale native and Biotite-like views.
Annotated domains77 with usable coordinates.
Domain coverage645 / 905 aa (71.3%)Merged over positioned domains only.
Domain description2 PAS_3,1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa905 aa
Domain-by-domain annotation7 items
2 PAS_9#2
144-219 aa · 76 aa · 8.4% of protein
Raw token
PAS_9:144:0.0000279:219:77:1023 PAS_3#3
274-353 aa · 80 aa · 8.8% of protein
Raw token
PAS_3:274:0.00000186:353:80:894 HisKA#4
394-460 aa · 67 aa · 7.4% of protein
Raw token
HisKA:394:6.81e-16:460:67:645 HATPase_c#5
507-619 aa · 113 aa · 12.5% of protein
Raw token
HATPase_c:507:2.07e-29:619:113:1096 Response_reg#6
641-746 aa · 106 aa · 11.7% of protein
Raw token
Response_reg:641:8.31e-24:746:108:1117 Response_reg#7
785-901 aa · 117 aa · 12.9% of protein
Raw token
Response_reg:785:1.84e-26:901:117:111- Raw architecture: PAS_3:23:0.00000000039:108:86:89#PAS_9:144:0.0000279:219:77:102#PAS_3:274:0.00000186:353:80:89#HisKA:394:6.81e-16:460:67:64#HATPase_c:507:2.07e-29:619:113:109#Response_reg:641:8.31e-24:746:108:111#Response_reg:785:1.84e-26:901:117:111
- Domain description: 2 PAS_3,1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437645::NZ_QSRE01000001.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span778409-781117Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_03480RefSeq proteinWP_243007820.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00027Context members
DXC88_RS03480
Partner locus tags
DXC88_RS03480
Partner old locus tags
DXC88_03480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243007820.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS03480Primary locus identifier stored in the genes table.
Old locus tagDXC88_03480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval778 409-781 117 nt2 709 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span778 409-781 117 ntGCF_003437645::NZ_QSRE01000001.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span778 409-781 117 nt2 709 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
778 409 nt781 117 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC88_RS03480GCF_003437645#DXC88_RS03480
HKHybridCurrent focus
778 409-781 117 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS03480The current gene is the representative for this cluster.
PFAM architecturePAS_3 + PAS_9 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg7 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0398830
Simplified PFAM architecture for HKOC_0398830
PFAM domain coverage: 608 / 905 aa (67.2%)
1 aa905 aa
PAS_3PAS_9PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + PAS_9 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[23-99] | PAS_9[145-193] | PAS_3[279-349] | HisKA[394-460] | HATPase_c[508-621] | Response_reg[641-754] | Response_reg[785-900]
- Domain count: 7
- Matched identifier: HKOC_0398830
- Positioned domains: PAS_3 23-99 ; PAS_9 145-193 ; PAS_3 279-349 ; HisKA 394-460 ; HATPase_c 508-621 ; Response_reg 641-754 ; Response_reg 785-900
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS03480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key