1 HAMP#1
60-128 aa · 69 aa · 18.8% of protein
Raw token
HAMP:60:0.0000025:128:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS03240
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength367 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS03240Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length367 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 367 aa (65.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa367 aa
Domain-by-domain annotation3 items
2 HisKA#2
135-200 aa · 66 aa · 18.0% of protein
Raw token
HisKA:135:0.0000000000000143:200:66:643 HATPase_c#3
246-352 aa · 107 aa · 29.2% of protein
Raw token
HATPase_c:246:2.59e-31:352:107:109- Raw architecture: HAMP:60:0.0000025:128:69:69#HisKA:135:0.0000000000000143:200:66:64#HATPase_c:246:2.59e-31:352:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span727517-729288Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_03240RefSeq proteinWP_117630419.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00024Context members
DXC88_RS03235DXC88_RS03240
Partner locus tags
DXC88_RS03235DXC88_RS03240
Partner old locus tags
DXC88_03235DXC88_03240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630419.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PCV4Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PCV4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS03240Primary locus identifier stored in the genes table.
Old locus tagDXC88_03240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval728 185-729 288 nt1 104 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span727 517-729 288 ntGCF_003437645::NZ_QSRE01000001.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span727 517-729 288 nt1 772 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
727 517 nt729 288 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS03235GCF_003437645#DXC88_RS03235
RROmpR
727 517-728 188 nt · Forward (+)
DXC88_RS03240GCF_003437645#DXC88_RS03240
HKClassicCurrent focus
728 185-729 288 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS03240The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2706779
Simplified PFAM architecture for HKOC_2706779
PFAM domain coverage: 173 / 367 aa (47.1%)
1 aa367 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[135-199] | HATPase_c[246-353]
- Domain count: 2
- Matched identifier: HKOC_2706779
- Positioned domains: HisKA 135-199 ; HATPase_c 246-353
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS03240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key