1 Response_reg#1
5-106 aa · 102 aa · 18.8% of protein
Raw token
Response_reg:5:4.58e-25:106:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS03025
Response regulator, unclassified
Hungatella hathewayi · GCF_003437645
ClassRRTypeunclassifiedLength542 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS03025Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length542 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage178 / 542 aa (32.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa542 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
439-477 aa · 39 aa · 7.2% of protein
Raw token
HTH_AraC:439:0.000000699:477:39:423 HTH_AraC#3
492-528 aa · 37 aa · 6.8% of protein
Raw token
HTH_AraC:492:0.00000000148:528:37:42- Raw architecture: Response_reg:5:4.58e-25:106:102:111#HTH_AraC:439:0.000000699:477:39:42#HTH_AraC:492:0.00000000148:528:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span665998-669524Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_03025RefSeq proteinWP_117630387.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00022Context members
DXC88_RS03025DXC88_RS03030
Partner locus tags
DXC88_RS03025DXC88_RS03030
Partner old locus tags
DXC88_03025DXC88_03030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630387.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PCZ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PCZ8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS03025Primary locus identifier stored in the genes table.
Old locus tagDXC88_03025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval665 998-667 626 nt1 629 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span665 998-669 524 ntGCF_003437645::NZ_QSRE01000001.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span665 998-669 524 nt3 527 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
665 998 nt669 524 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS03025GCF_003437645#DXC88_RS03025
RRunclassifiedCurrent focus
665 998-667 626 nt · Reverse (-)
DXC88_RS03030GCF_003437645#DXC88_RS03030
HKClassic
667 623-669 524 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS03025The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0086012
Simplified PFAM architecture for RROC_0086012
PFAM domain coverage: 322 / 542 aa (59.4%)
1 aa542 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-118] | GGDEF_2[162-291] | HTH_18[451-528]
- Domain count: 3
- Matched identifier: RROC_0086012
- Positioned domains: Response_reg 5-118 ; Response_reg 5-118 ; GGDEF_2 162-291 ; GGDEF_2 162-291 ; HTH_18 451-528 ; HTH_18 451-528
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS03025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key