1 HAMP#1
172-238 aa · 67 aa · 13.9% of protein
Raw token
HAMP:172:1.76e-16:238:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS02345
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength482 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS02345Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length482 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 482 aa (49.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa482 aa
Domain-by-domain annotation3 items
2 HisKA#2
249-309 aa · 61 aa · 12.7% of protein
Raw token
HisKA:249:0.000000000107:309:61:643 HATPase_c#3
355-463 aa · 109 aa · 22.6% of protein
Raw token
HATPase_c:355:3.1e-26:463:109:109- Raw architecture: HAMP:172:1.76e-16:238:67:69#HisKA:249:0.000000000107:309:61:64#HATPase_c:355:3.1e-26:463:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span513911-516027Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_02345RefSeq proteinWP_025529371.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00019Context members
DXC88_RS02340DXC88_RS02345
Partner locus tags
DXC88_RS02340DXC88_RS02345
Partner old locus tags
DXC88_02340DXC88_02345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529371.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7H4I8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7H4I8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS02345Primary locus identifier stored in the genes table.
Old locus tagDXC88_02345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval514 579-516 027 nt1 449 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span513 911-516 027 ntGCF_003437645::NZ_QSRE01000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span513 911-516 027 nt2 117 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
513 911 nt516 027 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS02340GCF_003437645#DXC88_RS02340
RROmpR
513 911-514 582 nt · Forward (+)
DXC88_RS02345GCF_003437645#DXC88_RS02345
HKClassicCurrent focus
514 579-516 027 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS16370Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1604667
Simplified PFAM architecture for HKOC_1604667
PFAM domain coverage: 223 / 482 aa (46.3%)
1 aa482 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-238] | HisKA[249-308] | HATPase_c[355-464]
- Domain count: 3
- Matched identifier: HKOC_1604667
- Positioned domains: HAMP 186-238 ; HisKA 249-308 ; HATPase_c 355-464
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS16370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key