1 HisKA#1
292-358 aa · 67 aa · 8.3% of protein
Raw token
HisKA:292:0.00000000000000265:358:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS02190
Histidine kinase, Hybrid
Hungatella hathewayi · GCF_003437645
ClassHKTypeHybridLength812 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS02190Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length812 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage418 / 812 aa (51.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa812 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
405-522 aa · 118 aa · 14.5% of protein
Raw token
HATPase_c:405:5.82e-30:522:118:1093 Response_reg#3
542-657 aa · 116 aa · 14.3% of protein
Raw token
Response_reg:542:9.1e-20:657:116:1114 Response_reg#4
684-800 aa · 117 aa · 14.4% of protein
Raw token
Response_reg:684:2.74e-31:800:117:111- Raw architecture: HisKA:292:0.00000000000000265:358:67:64#HATPase_c:405:5.82e-30:522:118:109#Response_reg:542:9.1e-20:657:116:111#Response_reg:684:2.74e-31:800:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span476413-480637Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_02190RefSeq proteinWP_117630305.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00017Context members
DXC88_RS02190DXC88_RS02195
Partner locus tags
DXC88_RS02190DXC88_RS02195
Partner old locus tags
DXC88_02190DXC88_02195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117630305.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS02190Primary locus identifier stored in the genes table.
Old locus tagDXC88_02190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval476 413-478 851 nt2 439 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span476 413-480 637 ntGCF_003437645::NZ_QSRE01000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span476 413-480 637 nt4 225 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
476 413 nt480 637 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS02190GCF_003437645#DXC88_RS02190
HKHybridCurrent focus
476 413-478 851 nt · Forward (+)
DXC88_RS02195GCF_003437645#DXC88_RS02195
RRPleD_VieA
478 949-480 637 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS02190The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0537827
Simplified PFAM architecture for HKOC_0537827
PFAM domain coverage: 416 / 812 aa (51.2%)
1 aa812 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[292-358] | HATPase_c[405-521] | Response_reg[542-657] | Response_reg[684-799]
- Domain count: 4
- Matched identifier: HKOC_0537827
- Positioned domains: HisKA 292-358 ; HATPase_c 405-521 ; Response_reg 542-657 ; Response_reg 684-799
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS02190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key