1 Response_reg#1
5-105 aa · 101 aa · 20.4% of protein
Raw token
Response_reg:5:2.51e-32:105:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS01970
Response regulator, unclassified
Hungatella hathewayi · GCF_003437645
ClassRRTypeunclassifiedLength496 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003437645#DXC88_RS01970Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage177 / 496 aa (35.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
402-443 aa · 42 aa · 8.5% of protein
Raw token
HTH_AraC:402:0.00000041:443:42:423 HTH_AraC#3
460-493 aa · 34 aa · 6.9% of protein
Raw token
HTH_AraC:460:0.0000000473:493:34:42- Raw architecture: Response_reg:5:2.51e-32:105:101:111#HTH_AraC:402:0.00000041:443:42:42#HTH_AraC:460:0.0000000473:493:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003437645::NZ_QSRE01000001.1::G00013
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span425375-430440Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_01970RefSeq proteinWP_117630270.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00013Context members
DXC88_RS01965DXC88_RS01970DXC88_RS01975
Partner locus tags
DXC88_RS01965DXC88_RS01970DXC88_RS01975
Partner old locus tags
DXC88_01965DXC88_01970DXC88_01975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630270.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PDM3Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PDM3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS01970Primary locus identifier stored in the genes table.
Old locus tagDXC88_01970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval427 144-428 634 nt1 491 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span425 375-430 440 ntGCF_003437645::NZ_QSRE01000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span425 375-430 440 nt5 066 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
425 375 nt430 440 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXC88_RS01965GCF_003437645#DXC88_RS01965
HKClassic
425 375-427 159 nt · Forward (+)
DXC88_RS01970GCF_003437645#DXC88_RS01970
RRunclassifiedCurrent focus
427 144-428 634 nt · Forward (+)
DXC88_RS01975GCF_003437645#DXC88_RS01975
HKClassic
428 926-430 440 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS01970The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0162536
Simplified PFAM architecture for RROC_0162536
PFAM domain coverage: 181 / 496 aa (36.5%)
1 aa496 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-107] | HTH_18[415-492]
- Domain count: 2
- Matched identifier: RROC_0162536
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107 ; HTH_18 415-492 ; HTH_18 415-492
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS01970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key