1 dCache_1#1
174-290 aa · 117 aa · 19.7% of protein
Raw token
dCache_1:174:0.000000287:290:120:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS01965
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003437645#DXC88_RS01965Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage357 / 594 aa (60.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation4 items
2 HAMP#2
309-374 aa · 66 aa · 11.1% of protein
Raw token
HAMP:309:0.000000164:374:66:693 His_kinase#3
391-466 aa · 76 aa · 12.8% of protein
Raw token
His_kinase:391:2.03e-25:466:76:804 HATPase_c#4
487-584 aa · 98 aa · 16.5% of protein
Raw token
HATPase_c:487:0.000000000589:584:107:109- Raw architecture: dCache_1:174:0.000000287:290:120:195#HAMP:309:0.000000164:374:66:69#His_kinase:391:2.03e-25:466:76:80#HATPase_c:487:0.000000000589:584:107:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003437645::NZ_QSRE01000001.1::G00013
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span425375-430440Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_01965RefSeq proteinWP_117630269.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00013Context members
DXC88_RS01965DXC88_RS01970DXC88_RS01975
Partner locus tags
DXC88_RS01965DXC88_RS01970DXC88_RS01975
Partner old locus tags
DXC88_01965DXC88_01970DXC88_01975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630269.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PFK9Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PFK9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS01965Primary locus identifier stored in the genes table.
Old locus tagDXC88_01965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval425 375-427 159 nt1 785 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span425 375-430 440 ntGCF_003437645::NZ_QSRE01000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span425 375-430 440 nt5 066 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
425 375 nt430 440 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXC88_RS01965GCF_003437645#DXC88_RS01965
HKClassicCurrent focus
425 375-427 159 nt · Forward (+)
DXC88_RS01970GCF_003437645#DXC88_RS01970
RRunclassified
427 144-428 634 nt · Forward (+)
DXC88_RS01975GCF_003437645#DXC88_RS01975
HKClassic
428 926-430 440 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS01965The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1088507
Simplified PFAM architecture for HKOC_1088507
PFAM domain coverage: 174 / 594 aa (29.3%)
1 aa594 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[392-467] | HATPase_c[487-584]
- Domain count: 2
- Matched identifier: HKOC_1088507
- Positioned domains: His_kinase 392-467 ; HATPase_c 487-584
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS01965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key