1 Hpt#1
10-101 aa · 92 aa · 14.2% of protein
Raw token
Hpt:10:0.0000000000106:101:92:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS01395
Histidine kinase, CheA
Hungatella hathewayi · GCF_003437645
ClassHKTypeCheALength648 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS01395Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length648 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage442 / 648 aa (68.2%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa648 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
261-334 aa · 74 aa · 11.4% of protein
Raw token
H-kinase_dim:261:0.000000254:334:74:673 HATPase_c#3
360-501 aa · 142 aa · 21.9% of protein
Raw token
HATPase_c:360:6.11e-19:501:142:1094 CheW#4
506-639 aa · 134 aa · 20.7% of protein
Raw token
CheW:506:1.92e-16:639:135:138- Raw architecture: Hpt:10:0.0000000000106:101:92:84#H-kinase_dim:261:0.000000254:334:74:67#HATPase_c:360:6.11e-19:501:142:109#CheW:506:1.92e-16:639:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span291637-294527Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_01395RefSeq proteinWP_117630500.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00009Context members
DXC88_RS01390DXC88_RS01395
Partner locus tags
DXC88_RS01390DXC88_RS01395
Partner old locus tags
DXC88_01390DXC88_01395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630500.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PF29Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PF29_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS01395Primary locus identifier stored in the genes table.
Old locus tagDXC88_01395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval292 581-294 527 nt1 947 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span291 637-294 527 ntGCF_003437645::NZ_QSRE01000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span291 637-294 527 nt2 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
291 637 nt294 527 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS01390GCF_003437645#DXC88_RS01390
RRPleD
291 637-292 575 nt · Forward (+)
DXC88_RS01395GCF_003437645#DXC88_RS01395
HKCheACurrent focus
292 581-294 527 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS01395The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0901438
Simplified PFAM architecture for HKOC_0901438
PFAM domain coverage: 485 / 648 aa (74.8%)
1 aa648 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[10-96] | P2[144-220] | H-kinase_dim[260-310] | HATPase_c[364-501] | CheW[508-639]
- Domain count: 5
- Matched identifier: HKOC_0901438
- Positioned domains: Hpt 10-96 ; P2 144-220 ; H-kinase_dim 260-310 ; HATPase_c 364-501 ; CheW 508-639
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS01395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key