1 Response_reg#1
7-118 aa · 112 aa · 35.9% of protein
Raw token
Response_reg:7:1.49e-31:118:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS01390
Response regulator, PleD family
Hungatella hathewayi · GCF_003437645
ClassRRTypePleDLength312 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS01390Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage265 / 312 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 GGDEF#2
148-300 aa · 153 aa · 49.0% of protein
Raw token
GGDEF:148:1.53e-44:300:160:160- Raw architecture: Response_reg:7:1.49e-31:118:112:111#GGDEF:148:1.53e-44:300:160:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span291637-294527Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_01390RefSeq proteinWP_002600338.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00009Context members
DXC88_RS01390DXC88_RS01395
Partner locus tags
DXC88_RS01390DXC88_RS01395
Partner old locus tags
DXC88_01390DXC88_01395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002600338.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS01390Primary locus identifier stored in the genes table.
Old locus tagDXC88_01390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval291 637-292 575 nt939 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span291 637-294 527 ntGCF_003437645::NZ_QSRE01000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span291 637-294 527 nt2 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
291 637 nt294 527 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS01390GCF_003437645#DXC88_RS01390
RRPleDCurrent focus
291 637-292 575 nt · Forward (+)
DXC88_RS01395GCF_003437645#DXC88_RS01395
HKCheA
292 581-294 527 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS02620Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0547009
Simplified PFAM architecture for RROC_0547009
PFAM domain coverage: 265 / 312 aa (84.9%)
1 aa312 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[7-118] | GGDEF[148-300]
- Domain count: 2
- Matched identifier: RROC_0547009
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GGDEF 148-300 ; GGDEF 148-300
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS02620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key