1 Response_reg#1
6-117 aa · 112 aa · 88.9% of protein
Raw token
Response_reg:6:5.29e-35:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS01375
Response regulator, CheY family
Hungatella hathewayi · GCF_003437645
ClassRRTypeCheYLength126 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437645#DXC88_RS01375Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length126 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 126 aa (88.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa126 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:5.29e-35:117:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437645::NZ_QSRE01000001.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span290127-290507Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_01375RefSeq proteinWP_002600341.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00008Context members
DXC88_RS01375
Partner locus tags
DXC88_RS01375
Partner old locus tags
DXC88_01375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600341.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V3XY36Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V3XY36_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS01375Primary locus identifier stored in the genes table.
Old locus tagDXC88_01375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval290 127-290 507 nt381 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span290 127-290 507 ntGCF_003437645::NZ_QSRE01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span290 127-290 507 nt381 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
290 127 nt290 507 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC88_RS01375GCF_003437645#DXC88_RS01375
RRCheYCurrent focus
290 127-290 507 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS02635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2360492
Simplified PFAM architecture for RROC_2360492
PFAM domain coverage: 111 / 126 aa (88.1%)
1 aa126 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-116]
- Domain count: 1
- Matched identifier: RROC_2360492
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS02635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key