1 dCache_1#1
177-287 aa · 111 aa · 18.3% of protein
Raw token
dCache_1:177:0.000000000848:287:116:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS00630
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS00630Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage385 / 606 aa (63.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation4 items
2 HAMP#2
304-373 aa · 70 aa · 11.6% of protein
Raw token
HAMP:304:0.000000000000288:373:70:693 His_kinase#3
388-467 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:388:3.15e-28:467:80:804 HATPase_c#4
482-605 aa · 124 aa · 20.5% of protein
Raw token
HATPase_c:482:0.0000000000000405:605:124:109- Raw architecture: dCache_1:177:0.000000000848:287:116:195#HAMP:304:0.000000000000288:373:70:69#His_kinase:388:3.15e-28:467:80:80#HATPase_c:482:0.0000000000000405:605:124:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133755-137157Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_00630RefSeq proteinWP_117630144.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00005Context members
DXC88_RS00625DXC88_RS00630
Partner locus tags
DXC88_RS00625DXC88_RS00630
Partner old locus tags
DXC88_00625DXC88_00630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630144.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PEJ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PEJ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS00630Primary locus identifier stored in the genes table.
Old locus tagDXC88_00630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval135 337-137 157 nt1 821 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span133 755-137 157 ntGCF_003437645::NZ_QSRE01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span133 755-137 157 nt3 403 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 755 nt137 157 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS00625GCF_003437645#DXC88_RS00625
RRunclassified
133 755-135 344 nt · Forward (+)
DXC88_RS00630GCF_003437645#DXC88_RS00630
HKClassicCurrent focus
135 337-137 157 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS00630The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1024487
Simplified PFAM architecture for HKOC_1024487
PFAM domain coverage: 255 / 606 aa (42.1%)
1 aa606 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[321-372] | His_kinase[388-467] | HATPase_c[482-604]
- Domain count: 3
- Matched identifier: HKOC_1024487
- Positioned domains: HAMP 321-372 ; His_kinase 388-467 ; HATPase_c 482-604
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS00630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key