1 Response_reg#1
5-117 aa · 113 aa · 33.4% of protein
Raw token
Response_reg:5:5.8e-28:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS00445
Response regulator, unclassified
Hungatella hathewayi · GCF_003437645
ClassRRTypeunclassifiedLength338 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437645#DXC88_RS00445Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length338 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 338 aa (42.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa338 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
306-334 aa · 29 aa · 8.6% of protein
Raw token
HTH_AraC:306:0.000000184:334:29:42- Raw architecture: Response_reg:5:5.8e-28:117:113:111#HTH_AraC:306:0.000000184:334:29:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437645::NZ_QSRE01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span94547-95563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_00445RefSeq proteinWP_117630128.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00004Context members
DXC88_RS00445
Partner locus tags
DXC88_RS00445
Partner old locus tags
DXC88_00445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630128.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PH05Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PH05_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS00445Primary locus identifier stored in the genes table.
Old locus tagDXC88_00445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval94 547-95 563 nt1 017 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span94 547-95 563 ntGCF_003437645::NZ_QSRE01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span94 547-95 563 nt1 017 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 547 nt95 563 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC88_RS00445GCF_003437645#DXC88_RS00445
RRunclassifiedCurrent focus
94 547-95 563 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS00445The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0503981
Simplified PFAM architecture for RROC_0503981
PFAM domain coverage: 189 / 338 aa (55.9%)
1 aa338 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[261-336]
- Domain count: 2
- Matched identifier: RROC_0503981
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HTH_18 261-336 ; HTH_18 261-336
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS00445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key