1 His_kinase#1
403-484 aa · 82 aa · 13.4% of protein
Raw token
His_kinase:403:6.12e-30:484:82:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS00350
Histidine kinase, Classic
Hungatella hathewayi · GCF_003437645
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003437645#DXC88_RS00350Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 611 aa (30.8%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
503-608 aa · 106 aa · 17.3% of protein
Raw token
HATPase_c:503:0.0000000000000607:608:108:109- Raw architecture: His_kinase:403:6.12e-30:484:82:80#HATPase_c:503:0.0000000000000607:608:108:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003437645::NZ_QSRE01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67814-70373Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_00350RefSeq proteinWP_117630114.1
Context group ID
GCF_003437645::NZ_QSRE01000001.1::G00002Context members
DXC88_RS00350DXC88_RS00355
Partner locus tags
DXC88_RS00350DXC88_RS00355
Partner old locus tags
DXC88_00350DXC88_00355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630114.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PEQ3Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PEQ3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS00350Primary locus identifier stored in the genes table.
Old locus tagDXC88_00350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000001.1Sequence record reported by the local genomic context database.
Genomic interval67 814-69 649 nt1 836 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 814-70 373 ntGCF_003437645::NZ_QSRE01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span67 814-70 373 nt2 560 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 814 nt70 373 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXC88_RS00350GCF_003437645#DXC88_RS00350
HKClassicCurrent focus
67 814-69 649 nt · Reverse (-)
DXC88_RS00355GCF_003437645#DXC88_RS00355
RRunclassified
69 639-70 373 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS00350The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1001681
Simplified PFAM architecture for HKOC_1001681
PFAM domain coverage: 187 / 611 aa (30.6%)
1 aa611 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[404-484] | HATPase_c[503-608]
- Domain count: 2
- Matched identifier: HKOC_1001681
- Positioned domains: His_kinase 404-484 ; HATPase_c 503-608
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS00350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key