1 Response_reg#1
8-119 aa · 112 aa · 89.6% of protein
Raw token
Response_reg:8:2.41e-20:119:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD13_RS11485
Response regulator, CheY family
Agathobacter rectalis · GCF_003436785
ClassRRTypeCheYLength125 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003436785#DXD13_RS11485Stable P2CS identifier used across views.
GenomeGCF_003436785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length125 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 125 aa (89.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa125 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:8:2.41e-20:119:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003436785::NZ_QSQP01000014.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span51041-51418Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD13_11510RefSeq proteinWP_117686361.1
Context group ID
GCF_003436785::NZ_QSQP01000014.1::G00013Context members
DXD13_RS11485
Partner locus tags
DXD13_RS11485
Partner old locus tags
DXD13_11510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117686361.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4LW81Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4LW81_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD13_RS11485Primary locus identifier stored in the genes table.
Old locus tagDXD13_11510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSQP01000014.1Sequence record reported by the local genomic context database.
Genomic interval51 041-51 418 nt378 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 041-51 418 ntGCF_003436785::NZ_QSQP01000014.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436785::NZ_QSQP01000014.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSQP01000014.1All displayed genes belong to this local TCS context.
Neighborhood span51 041-51 418 nt378 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 041 nt51 418 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD13_RS11485GCF_003436785#DXD13_RS11485
RRCheYCurrent focus
51 041-51 418 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436785#DXD13_RS11485The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2372395
Simplified PFAM architecture for RROC_2372395
PFAM domain coverage: 111 / 125 aa (88.8%)
1 aa125 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[8-118]
- Domain count: 1
- Matched identifier: RROC_2372395
- Positioned domains: Response_reg 8-118 ; Response_reg 8-118
Cluster members and taxonomy
Representative gene: GCF_003436785#DXD13_RS11485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003436785
AssemblyASM343678v1 · Scaffoldhaploid
Genome composition3 340 709 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 76 · HK 31 · RR 44CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key