1 HisKA#1
199-264 aa · 66 aa · 15.5% of protein
Raw token
HisKA:199:0.00000000000904:264:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD13_RS01065
Histidine kinase, Classic
Agathobacter rectalis · GCF_003436785
ClassHKTypeClassicLength425 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003436785#DXD13_RS01065Stable P2CS identifier used across views.
GenomeGCF_003436785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 425 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
319-423 aa · 105 aa · 24.7% of protein
Raw token
HATPase_c:319:9.18e-16:423:106:109- Raw architecture: HisKA:199:0.00000000000904:264:66:64#HATPase_c:319:9.18e-16:423:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003436785::NZ_QSQP01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span209130-211117Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD13_01070RefSeq proteinWP_117684623.1
Context group ID
GCF_003436785::NZ_QSQP01000001.1::G00004Context members
DXD13_RS01065DXD13_RS01070
Partner locus tags
DXD13_RS01065DXD13_RS01070
Partner old locus tags
DXD13_01070DXD13_01075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117684623.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4M7S0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4M7S0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD13_RS01065Primary locus identifier stored in the genes table.
Old locus tagDXD13_01070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSQP01000001.1Sequence record reported by the local genomic context database.
Genomic interval209 130-210 407 nt1 278 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span209 130-211 117 ntGCF_003436785::NZ_QSQP01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003436785::NZ_QSQP01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSQP01000001.1All displayed genes belong to this local TCS context.
Neighborhood span209 130-211 117 nt1 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 130 nt211 117 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD13_RS01065GCF_003436785#DXD13_RS01065
HKClassicCurrent focus
209 130-210 407 nt · Reverse (-)
DXD13_RS01070GCF_003436785#DXD13_RS01070
RROmpR
210 446-211 117 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436785#DXD13_RS01065The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2217738
Simplified PFAM architecture for HKOC_2217738
PFAM domain coverage: 170 / 425 aa (40.0%)
1 aa425 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[200-264] | HATPase_c[319-423]
- Domain count: 2
- Matched identifier: HKOC_2217738
- Positioned domains: HisKA 200-264 ; HATPase_c 319-423
Cluster members and taxonomy
Representative gene: GCF_003436785#DXD13_RS01065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003436785
AssemblyASM343678v1 · Scaffoldhaploid
Genome composition3 340 709 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 76 · HK 31 · RR 44CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key