1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:7.89e-23:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW125_RS03240
Response regulator OmpR family
Dorea sp. AM10-31 · GCF_003435815
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435815#DW125_RS03240Stable P2CS identifier used across views.
GenomeGCF_003435815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:148:3.37e-31:221:75:77- Raw architecture: Response_reg:4:7.89e-23:113:111:111#Trans_reg_C:148:3.37e-31:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435815::NZ_QTUV01000002.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28364-29038Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW125_03240RefSeq proteinWP_021861072.1
Context group ID
GCF_003435815::NZ_QTUV01000002.1::G00015Context members
DW125_RS03240
Partner locus tags
DW125_RS03240
Partner old locus tags
DW125_03240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021861072.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7ESY0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7ESY0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW125_RS03240Primary locus identifier stored in the genes table.
Old locus tagDW125_03240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUV01000002.1Sequence record reported by the local genomic context database.
Genomic interval28 364-29 038 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 364-29 038 ntGCF_003435815::NZ_QTUV01000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435815::NZ_QTUV01000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUV01000002.1All displayed genes belong to this local TCS context.
Neighborhood span28 364-29 038 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 364 nt29 038 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW125_RS03240GCF_003435815#DW125_RS03240
RROmpRCurrent focus
28 364-29 038 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435815#DW125_RS03240The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543284
Simplified PFAM architecture for RROC_1543284
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1543284
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_003435815#DW125_RS03240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 098 · GCF_003435815
AssemblyASM343581v1 · Scaffoldhaploid
Genome composition2 920 802 bp · 41,0% GCDorea sp. AM10-31
Signal transduction countsGenes 62 · HK 32 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key