1 PilJ#1
37-123 aa · 87 aa · 8.3% of protein
Raw token
PilJ:37:0.0000155:123:98:112P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW125_RS00640
Histidine kinase, Hybrid
Dorea sp. AM10-31 · GCF_003435815
ClassHKTypeHybridLength1051 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435815#DW125_RS00640Stable P2CS identifier used across views.
GenomeGCF_003435815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
PilJGGDEFHisKAHATPase_cResponse_reg
Protein length1051 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage538 / 1051 aa (51.2%)Merged over positioned domains only.
Domain description1 PilJ,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation5 items
2 GGDEF#2
202-351 aa · 150 aa · 14.3% of protein
Raw token
GGDEF:202:9.39e-23:351:157:1603 HisKA#3
676-742 aa · 67 aa · 6.4% of protein
Raw token
HisKA:676:0.000000000000665:742:67:644 HATPase_c#4
789-906 aa · 118 aa · 11.2% of protein
Raw token
HATPase_c:789:2.83e-24:906:118:1095 Response_reg#5
931-1046 aa · 116 aa · 11.0% of protein
Raw token
Response_reg:931:2.39e-28:1046:116:111- Raw architecture: PilJ:37:0.0000155:123:98:112#GGDEF:202:9.39e-23:351:157:160#HisKA:676:0.000000000000665:742:67:64#HATPase_c:789:2.83e-24:906:118:109#Response_reg:931:2.39e-28:1046:116:111
- Domain description: 1 PilJ,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435815::NZ_QTUV01000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span135548-138703Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW125_00640RefSeq proteinWP_242992873.1
Context group ID
GCF_003435815::NZ_QTUV01000001.1::G00002Context members
DW125_RS00640
Partner locus tags
DW125_RS00640
Partner old locus tags
DW125_00640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242992873.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW125_RS00640Primary locus identifier stored in the genes table.
Old locus tagDW125_00640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTUV01000001.1Sequence record reported by the local genomic context database.
Genomic interval135 548-138 703 nt3 156 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span135 548-138 703 ntGCF_003435815::NZ_QTUV01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435815::NZ_QTUV01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTUV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span135 548-138 703 nt3 156 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 548 nt138 703 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW125_RS00640GCF_003435815#DW125_RS00640
HKHybridCurrent focus
135 548-138 703 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435815#DW125_RS00640The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0258577
Simplified PFAM architecture for HKOC_0258577
PFAM domain coverage: 448 / 1051 aa (42.6%)
1 aa1051 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[202-352] | HisKA[676-742] | HATPase_c[790-906] | Response_reg[931-1043]
- Domain count: 4
- Matched identifier: HKOC_0258577
- Positioned domains: GGDEF 202-352 ; HisKA 676-742 ; HATPase_c 790-906 ; Response_reg 931-1043
Cluster members and taxonomy
Representative gene: GCF_003435815#DW125_RS00640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 098 · GCF_003435815
AssemblyASM343581v1 · Scaffoldhaploid
Genome composition2 920 802 bp · 41,0% GCDorea sp. AM10-31
Signal transduction countsGenes 62 · HK 32 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key