1 dCache_1#1
171-280 aa · 110 aa · 18.4% of protein
Raw token
dCache_1:171:0.00000000000000171:280:114:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS11625
Histidine kinase, Classic
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435535#DXA87_RS11625Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage369 / 599 aa (61.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation4 items
2 HAMP#2
298-367 aa · 70 aa · 11.7% of protein
Raw token
HAMP:298:0.0000000000784:367:70:693 His_kinase#3
383-461 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:383:5.3e-35:461:79:804 HATPase_c#4
477-586 aa · 110 aa · 18.4% of protein
Raw token
HATPase_c:477:2.17e-16:586:112:109- Raw architecture: dCache_1:171:0.00000000000000171:280:114:195#HAMP:298:0.0000000000784:367:70:69#His_kinase:383:5.3e-35:461:79:80#HATPase_c:477:2.17e-16:586:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435535::NZ_QWGO01000021.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27743-31203Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_11625RefSeq proteinWP_117504499.1
Context group ID
GCF_003435535::NZ_QWGO01000021.1::G00016Context members
DXA87_RS11625DXA87_RS11630
Partner locus tags
DXA87_RS11625DXA87_RS11630
Partner old locus tags
DXA87_11625DXA87_11630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117504499.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS11625Primary locus identifier stored in the genes table.
Old locus tagDXA87_11625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000021.1Sequence record reported by the local genomic context database.
Genomic interval27 743-29 542 nt1 800 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 743-31 203 ntGCF_003435535::NZ_QWGO01000021.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000021.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000021.1All displayed genes belong to this local TCS context.
Neighborhood span27 743-31 203 nt3 461 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 743 nt31 203 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA87_RS11625GCF_003435535#DXA87_RS11625
HKClassicCurrent focus
27 743-29 542 nt · Reverse (-)
DXA87_RS11630GCF_003435535#DXA87_RS11630
RRunclassified
29 563-31 203 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435535#DXA87_RS11625The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1058349
Simplified PFAM architecture for HKOC_1058349
PFAM domain coverage: 470 / 599 aa (78.5%)
1 aa599 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[48-280] | HAMP[316-366] | His_kinase[383-461] | HATPase_c[477-583]
- Domain count: 4
- Matched identifier: HKOC_1058349
- Positioned domains: dCache_1 48-280 ; HAMP 316-366 ; His_kinase 383-461 ; HATPase_c 477-583
Cluster members and taxonomy
Representative gene: GCF_003435535#DXA87_RS11625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key