1 Response_reg#1
4-113 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:4:4.11e-40:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA87_RS03075
Response regulator OmpR family
Desulfotomaculum sp. OF05-3 · GCF_003435535
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435535#DXA87_RS03075Stable P2CS identifier used across views.
GenomeGCF_003435535Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Desulfotomaculaceae; Desulfotomaculum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 232 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-230 aa · 79 aa · 34.1% of protein
Raw token
Trans_reg_C:152:2.19e-34:230:79:77- Raw architecture: Response_reg:4:4.11e-40:113:111:111#Trans_reg_C:152:2.19e-34:230:79:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435535::NZ_QWGO01000003.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span116473-117171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA87_03075RefSeq proteinWP_015553762.1
Context group ID
GCF_003435535::NZ_QWGO01000003.1::G00023Context members
DXA87_RS03075
Partner locus tags
DXA87_RS03075
Partner old locus tags
DXA87_03075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015553762.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA87_RS03075Primary locus identifier stored in the genes table.
Old locus tagDXA87_03075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGO01000003.1Sequence record reported by the local genomic context database.
Genomic interval116 473-117 171 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 473-117 171 ntGCF_003435535::NZ_QWGO01000003.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435535::NZ_QWGO01000003.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGO01000003.1All displayed genes belong to this local TCS context.
Neighborhood span116 473-117 171 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 473 nt117 171 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA87_RS03075GCF_003435535#DXA87_RS03075
RROmpRCurrent focus
116 473-117 171 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS13220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1129357
Simplified PFAM architecture for RROC_1129357
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[153-230]
- Domain count: 2
- Matched identifier: RROC_1129357
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 153-230 ; Trans_reg_C 153-230
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS13220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 243 · GCF_003435535
AssemblyASM343553v1 · Scaffoldhaploid
Genome composition3 720 446 bp · 48,0% GCDesulfotomaculum sp. OF05-3
Signal transduction countsGenes 66 · HK 31 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyDesulfotomaculaceaeGenusDesulfotomaculum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Desulfotomaculaceae7Desulfotomaculum
Related genes
Preview from the same derived genome key