1 GGDEF#1
261-408 aa · 148 aa · 18.8% of protein
Raw token
GGDEF:261:3.34e-40:408:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS03230
Response regulator, RpfG family
Anaerofustis stercorihominis · GCF_003435385
ClassRRTypeRpfGLength786 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435385#DW687_RS03230Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length786 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage362 / 786 aa (46.1%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa786 aa
Domain-by-domain annotation3 items
2 Response_reg#2
436-540 aa · 105 aa · 13.4% of protein
Raw token
Response_reg:436:7.75e-24:540:108:1113 HD#3
628-736 aa · 109 aa · 13.9% of protein
Raw token
HD:628:0.00000000000115:736:109:110- Raw architecture: GGDEF:261:3.34e-40:408:157:160#Response_reg:436:7.75e-24:540:108:111#HD:628:0.00000000000115:736:109:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435385::NZ_QUSM01000002.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span504122-506482Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_03230RefSeq proteinWP_117531577.1
Context group ID
GCF_003435385::NZ_QUSM01000002.1::G00010Context members
DW687_RS03230
Partner locus tags
DW687_RS03230
Partner old locus tags
DW687_03230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117531577.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3E1C5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3E1C5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS03230Primary locus identifier stored in the genes table.
Old locus tagDW687_03230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000002.1Sequence record reported by the local genomic context database.
Genomic interval504 122-506 482 nt2 361 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span504 122-506 482 ntGCF_003435385::NZ_QUSM01000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span504 122-506 482 nt2 361 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
504 122 nt506 482 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW687_RS03230GCF_003435385#DW687_RS03230
RRRpfGCurrent focus
504 122-506 482 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS03230The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016754
Simplified PFAM architecture for RROC_0016754
PFAM domain coverage: 400 / 786 aa (50.9%)
1 aa786 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[260-407] | Response_reg[436-547] | HD_5[617-756]
- Domain count: 3
- Matched identifier: RROC_0016754
- Positioned domains: GGDEF 260-407 ; GGDEF 260-407 ; Response_reg 436-547 ; Response_reg 436-547 ; HD_5 617-756 ; HD_5 617-756
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS03230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key