1 HAMP#1
319-372 aa · 54 aa · 4.3% of protein
Raw token
HAMP:319:0.00000677:372:54:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW687_RS00035
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_003435385
ClassHKTypeHybridLength1252 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435385#DW687_RS00035Stable P2CS identifier used across views.
GenomeGCF_003435385Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
HAMPPACGGDEFHisKAHATPase_cResponse_reg
Protein length1252 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage533 / 1252 aa (42.6%)Merged over positioned domains only.
Domain description1 HAMP,1 PAC,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1252 aa
Domain-by-domain annotation6 items
2 PAC#2
486-517 aa · 32 aa · 2.6% of protein
Raw token
PAC:486:0.0000107:517:32:433 GGDEF#3
530-678 aa · 149 aa · 11.9% of protein
Raw token
GGDEF:530:8.9e-22:678:158:1604 HisKA#4
878-944 aa · 67 aa · 5.4% of protein
Raw token
HisKA:878:3.79e-19:944:67:645 HATPase_c#5
990-1103 aa · 114 aa · 9.1% of protein
Raw token
HATPase_c:990:1.48e-27:1103:114:1096 Response_reg#6
1130-1246 aa · 117 aa · 9.3% of protein
Raw token
Response_reg:1130:1.34e-31:1246:117:111- Raw architecture: HAMP:319:0.00000677:372:54:69#PAC:486:0.0000107:517:32:43#GGDEF:530:8.9e-22:678:158:160#HisKA:878:3.79e-19:944:67:64#HATPase_c:990:1.48e-27:1103:114:109#Response_reg:1130:1.34e-31:1246:117:111
- Domain description: 1 HAMP,1 PAC,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435385::NZ_QUSM01000001.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span7784-11542Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW687_00035RefSeq proteinWP_181965800.1
Context group ID
GCF_003435385::NZ_QUSM01000001.1::G00001Context members
DW687_RS00035
Partner locus tags
DW687_RS00035
Partner old locus tags
DW687_00035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181965800.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW687_RS00035Primary locus identifier stored in the genes table.
Old locus tagDW687_00035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUSM01000001.1Sequence record reported by the local genomic context database.
Genomic interval7 784-11 542 nt3 759 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 784-11 542 ntGCF_003435385::NZ_QUSM01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435385::NZ_QUSM01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUSM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span7 784-11 542 nt3 759 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 784 nt11 542 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW687_RS00035GCF_003435385#DW687_RS00035
HKHybridCurrent focus
7 784-11 542 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435385#DW687_RS00035The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0134984
Simplified PFAM architecture for HKOC_0134984
PFAM domain coverage: 446 / 1252 aa (35.6%)
1 aa1252 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[530-677] | HisKA[878-944] | HATPase_c[990-1105] | Response_reg[1130-1244]
- Domain count: 4
- Matched identifier: HKOC_0134984
- Positioned domains: GGDEF 530-677 ; HisKA 878-944 ; HATPase_c 990-1105 ; Response_reg 1130-1244
Cluster members and taxonomy
Representative gene: GCF_003435385#DW687_RS00035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_003435385
AssemblyASM343538v1 · Scaffoldhaploid
Genome composition2 409 730 bp · 34,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 39 · HK 25 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key