1 Response_reg#1
7-116 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:7:1.3e-32:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS11645
Response regulator OmpR family
Clostridium sp. AF28-12 · GCF_003435225
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS11645Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 235 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-231 aa · 72 aa · 30.6% of protein
Raw token
Trans_reg_C:160:3.63e-21:231:72:77- Raw architecture: Response_reg:7:1.3e-32:116:111:111#Trans_reg_C:160:3.63e-21:231:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000013.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63378-65145Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_11650RefSeq proteinWP_015554126.1
Context group ID
GCF_003435225::NZ_QWGJ01000013.1::G00012Context members
DWY93_RS11640DWY93_RS11645
Partner locus tags
DWY93_RS11640DWY93_RS11645
Partner old locus tags
DWY93_11645DWY93_11650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015554126.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS11645Primary locus identifier stored in the genes table.
Old locus tagDWY93_11650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000013.1Sequence record reported by the local genomic context database.
Genomic interval64 438-65 145 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 378-65 145 ntGCF_003435225::NZ_QWGJ01000013.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000013.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000013.1All displayed genes belong to this local TCS context.
Neighborhood span63 378-65 145 nt1 768 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 378 nt65 145 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS11640GCF_003435225#DWY93_RS11640
HKClassic
63 378-64 448 nt · Forward (+)
DWY93_RS11645GCF_003435225#DWY93_RS11645
RROmpRCurrent focus
64 438-65 145 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS01260Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1024439
Simplified PFAM architecture for RROC_1024439
PFAM domain coverage: 183 / 235 aa (77.9%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[159-231]
- Domain count: 2
- Matched identifier: RROC_1024439
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 159-231 ; Trans_reg_C 159-231
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS01260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key