1 HAMP#1
183-252 aa · 70 aa · 14.1% of protein
Raw token
HAMP:183:0.000000000000437:252:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS01255
Histidine kinase, Classic
Clostridium sp. AF28-12 · GCF_003435225
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS01255Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 495 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-330 aa · 65 aa · 13.1% of protein
Raw token
HisKA:266:4.37e-16:330:65:643 HATPase_c#3
377-487 aa · 111 aa · 22.4% of protein
Raw token
HATPase_c:377:2.23e-29:487:111:109- Raw architecture: HAMP:183:0.000000000000437:252:70:69#HisKA:266:4.37e-16:330:65:64#HATPase_c:377:2.23e-29:487:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span272215-274422Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_01255RefSeq proteinWP_117469139.1
Context group ID
GCF_003435225::NZ_QWGJ01000001.1::G00004Context members
DWY93_RS01255DWY93_RS01260
Partner locus tags
DWY93_RS01255DWY93_RS01260
Partner old locus tags
DWY93_01255DWY93_01260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117469139.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS01255Primary locus identifier stored in the genes table.
Old locus tagDWY93_01255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval272 215-273 702 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span272 215-274 422 ntGCF_003435225::NZ_QWGJ01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span272 215-274 422 nt2 208 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
272 215 nt274 422 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS01255GCF_003435225#DWY93_RS01255
HKClassicCurrent focus
272 215-273 702 nt · Forward (+)
DWY93_RS01260GCF_003435225#DWY93_RS01260
RROmpR
273 733-274 422 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS01255The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1505461
Simplified PFAM architecture for HKOC_1505461
PFAM domain coverage: 228 / 495 aa (46.1%)
1 aa495 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-252] | HisKA[265-329] | HATPase_c[378-487]
- Domain count: 3
- Matched identifier: HKOC_1505461
- Positioned domains: HAMP 200-252 ; HisKA 265-329 ; HATPase_c 378-487
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS01255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key