1 HAMP#1
185-252 aa · 68 aa · 14.1% of protein
Raw token
HAMP:185:0.0000000106:252:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS01565
Histidine kinase, Classic
Clostridium sp. AF28-12 · GCF_003435225
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS01565Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 481 aa (47.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-321 aa · 60 aa · 12.5% of protein
Raw token
HisKA:262:0.0000000000000187:321:60:643 HATPase_c#3
368-467 aa · 100 aa · 20.8% of protein
Raw token
HATPase_c:368:6.64e-27:467:105:109- Raw architecture: HAMP:185:0.0000000106:252:68:69#HisKA:262:0.0000000000000187:321:60:64#HATPase_c:368:6.64e-27:467:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span352300-354446Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_01565RefSeq proteinWP_181968465.1
Context group ID
GCF_003435225::NZ_QWGJ01000001.1::G00005Context members
DWY93_RS01560DWY93_RS01565
Partner locus tags
DWY93_RS01560DWY93_RS01565
Partner old locus tags
DWY93_01560DWY93_01565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181968465.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS01565Primary locus identifier stored in the genes table.
Old locus tagDWY93_01565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval353 001-354 446 nt1 446 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span352 300-354 446 ntGCF_003435225::NZ_QWGJ01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span352 300-354 446 nt2 147 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
352 300 nt354 446 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS01560GCF_003435225#DWY93_RS01560
RROmpR
352 300-353 004 nt · Forward (+)
DWY93_RS01565GCF_003435225#DWY93_RS01565
HKClassicCurrent focus
353 001-354 446 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS01565The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1613136
Simplified PFAM architecture for HKOC_1613136
PFAM domain coverage: 163 / 481 aa (33.9%)
1 aa481 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[260-321] | HATPase_c[368-468]
- Domain count: 2
- Matched identifier: HKOC_1613136
- Positioned domains: HisKA 260-321 ; HATPase_c 368-468
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS01565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key