1 Response_reg#1
4-116 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:4:4.48e-22:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS11105
Response regulator, unclassified
Clostridium sp. AF28-12 · GCF_003435225
ClassRRTypeunclassifiedLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435225#DWY93_RS11105Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 228 aa (68.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HTH_11#2
166-208 aa · 43 aa · 18.9% of protein
Raw token
HTH_11:166:0.0000265:208:43:52- Raw architecture: Response_reg:4:4.48e-22:116:113:111#HTH_11:166:0.0000265:208:43:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435225::NZ_QWGJ01000012.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span61404-62090Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_11110RefSeq proteinWP_015554974.1
Context group ID
GCF_003435225::NZ_QWGJ01000012.1::G00011Context members
DWY93_RS11105
Partner locus tags
DWY93_RS11105
Partner old locus tags
DWY93_11110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015554974.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS11105Primary locus identifier stored in the genes table.
Old locus tagDWY93_11110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000012.1Sequence record reported by the local genomic context database.
Genomic interval61 404-62 090 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 404-62 090 ntGCF_003435225::NZ_QWGJ01000012.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000012.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000012.1All displayed genes belong to this local TCS context.
Neighborhood span61 404-62 090 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 404 nt62 090 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY93_RS11105GCF_003435225#DWY93_RS11105
RRunclassifiedCurrent focus
61 404-62 090 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS11105The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1314819
Simplified PFAM architecture for RROC_1314819
PFAM domain coverage: 112 / 228 aa (49.1%)
1 aa228 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_1314819
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS11105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key