1 HAMP#1
198-260 aa · 63 aa · 12.9% of protein
Raw token
HAMP:198:0.000000345:260:63:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS10700
Histidine kinase, Classic
Clostridium sp. AF28-12 · GCF_003435225
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435225#DWY93_RS10700Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 490 aa (48.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
264-329 aa · 66 aa · 13.5% of protein
Raw token
HisKA:264:0.0000000000000876:329:66:643 HATPase_c#3
377-486 aa · 110 aa · 22.4% of protein
Raw token
HATPase_c:377:3.33e-29:486:110:109- Raw architecture: HAMP:198:0.000000345:260:63:69#HisKA:264:0.0000000000000876:329:66:64#HATPase_c:377:3.33e-29:486:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435225::NZ_QWGJ01000011.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span91213-92685Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_10705RefSeq proteinWP_015555044.1
Context group ID
GCF_003435225::NZ_QWGJ01000011.1::G00009Context members
DWY93_RS10700
Partner locus tags
DWY93_RS10700
Partner old locus tags
DWY93_10705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015555044.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS10700Primary locus identifier stored in the genes table.
Old locus tagDWY93_10705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000011.1Sequence record reported by the local genomic context database.
Genomic interval91 213-92 685 nt1 473 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 213-92 685 ntGCF_003435225::NZ_QWGJ01000011.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000011.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span91 213-92 685 nt1 473 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 213 nt92 685 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY93_RS10700GCF_003435225#DWY93_RS10700
HKClassicCurrent focus
91 213-92 685 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS00735Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1535461
Simplified PFAM architecture for HKOC_1535461
PFAM domain coverage: 176 / 490 aa (35.9%)
1 aa490 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[264-329] | HATPase_c[377-486]
- Domain count: 2
- Matched identifier: HKOC_1535461
- Positioned domains: HisKA 264-329 ; HATPase_c 377-486
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS00735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key