1 Response_reg#1
6-120 aa · 115 aa · 42.8% of protein
Raw token
Response_reg:6:1.6e-25:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS10410
Response regulator Spo0A family
Clostridium sp. AF28-12 · GCF_003435225
ClassRRTypeSpo0ALength269 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435225#DWY93_RS10410Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length269 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 269 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa269 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
159-262 aa · 104 aa · 38.7% of protein
Raw token
Spo0A_C:159:1.45e-62:262:104:104- Raw architecture: Response_reg:6:1.6e-25:120:115:111#Spo0A_C:159:1.45e-62:262:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435225::NZ_QWGJ01000011.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span23492-24301Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_10415RefSeq proteinWP_015555104.1
Context group ID
GCF_003435225::NZ_QWGJ01000011.1::G00008Context members
DWY93_RS10410
Partner locus tags
DWY93_RS10410
Partner old locus tags
DWY93_10415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015555104.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS10410Primary locus identifier stored in the genes table.
Old locus tagDWY93_10415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000011.1Sequence record reported by the local genomic context database.
Genomic interval23 492-24 301 nt810 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 492-24 301 ntGCF_003435225::NZ_QWGJ01000011.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000011.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span23 492-24 301 nt810 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 492 nt24 301 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY93_RS10410GCF_003435225#DWY93_RS10410
RRSpo0ACurrent focus
23 492-24 301 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS01025Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0617422
Simplified PFAM architecture for RROC_0617422
PFAM domain coverage: 219 / 269 aa (81.4%)
1 aa269 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[159-262]
- Domain count: 2
- Matched identifier: RROC_0617422
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 159-262 ; Spo0A_C 159-262
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS01025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key