1 Response_reg#1
8-121 aa · 114 aa · 21.3% of protein
Raw token
Response_reg:8:2.41e-22:121:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS09970
Response regulator, unclassified
Clostridium sp. AF28-12 · GCF_003435225
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS09970Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage195 / 534 aa (36.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
440-481 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:440:0.00000171:481:42:423 HTH_AraC#3
493-531 aa · 39 aa · 7.3% of protein
Raw token
HTH_AraC:493:0.00000000028:531:39:42- Raw architecture: Response_reg:8:2.41e-22:121:114:111#HTH_AraC:440:0.00000171:481:42:42#HTH_AraC:493:0.00000000028:531:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000010.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42982-45362Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_09975RefSeq proteinWP_181968527.1
Context group ID
GCF_003435225::NZ_QWGJ01000010.1::G00007Context members
DWY93_RS09970DWY93_RS09975
Partner locus tags
DWY93_RS09970DWY93_RS09975
Partner old locus tags
DWY93_09975DWY93_09980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181968527.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS09970Primary locus identifier stored in the genes table.
Old locus tagDWY93_09975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000010.1Sequence record reported by the local genomic context database.
Genomic interval42 982-44 586 nt1 605 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 982-45 362 ntGCF_003435225::NZ_QWGJ01000010.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000010.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000010.1All displayed genes belong to this local TCS context.
Neighborhood span42 982-45 362 nt2 381 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 982 nt45 362 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS09970GCF_003435225#DWY93_RS09970
RRunclassifiedCurrent focus
42 982-44 586 nt · Forward (+)
DWY93_RS09975GCF_003435225#DWY93_RS09975
HKClassic
44 592-45 362 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS09970The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103603
Simplified PFAM architecture for RROC_0103603
PFAM domain coverage: 191 / 534 aa (35.8%)
1 aa534 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[8-120] | HTH_18[454-531]
- Domain count: 2
- Matched identifier: RROC_0103603
- Positioned domains: Response_reg 8-120 ; Response_reg 8-120 ; HTH_18 454-531 ; HTH_18 454-531
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS09970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key