1 HisKA#1
544-609 aa · 66 aa · 8.6% of protein
Raw token
HisKA:544:0.00000000000000393:609:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS06390
Histidine kinase, Classic
Clostridium sp. AF28-12 · GCF_003435225
ClassHKTypeClassicLength764 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS06390Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length764 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 764 aa (20.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa764 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
655-747 aa · 93 aa · 12.2% of protein
Raw token
HATPase_c:655:0.00000000000000246:747:96:109- Raw architecture: HisKA:544:0.00000000000000393:609:66:64#HATPase_c:655:0.00000000000000246:747:96:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000005.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113706-116707Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_06395RefSeq proteinWP_117471188.1
Context group ID
GCF_003435225::NZ_QWGJ01000005.1::G00031Context members
DWY93_RS06385DWY93_RS06390
Partner locus tags
DWY93_RS06385DWY93_RS06390
Partner old locus tags
DWY93_06390DWY93_06395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117471188.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS06390Primary locus identifier stored in the genes table.
Old locus tagDWY93_06395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000005.1Sequence record reported by the local genomic context database.
Genomic interval114 413-116 707 nt2 295 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 706-116 707 ntGCF_003435225::NZ_QWGJ01000005.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000005.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span113 706-116 707 nt3 002 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 706 nt116 707 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS06385GCF_003435225#DWY93_RS06385
RROmpR
113 706-114 401 nt · Forward (+)
DWY93_RS06390GCF_003435225#DWY93_RS06390
HKClassicCurrent focus
114 413-116 707 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS03955Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0634076
Simplified PFAM architecture for HKOC_0634076
PFAM domain coverage: 158 / 764 aa (20.7%)
1 aa764 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[544-609] | HATPase_c[656-747]
- Domain count: 2
- Matched identifier: HKOC_0634076
- Positioned domains: HisKA 544-609 ; HATPase_c 656-747
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS03955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key