1 PocR#1
38-199 aa · 162 aa · 36.6% of protein
Raw token
PocR:38:3.38e-48:199:162:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS03570
Histidine kinase, Classic
Clostridium sp. AF28-12 · GCF_003435225
ClassHKTypeClassicLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS03570Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PocRHis_kinaseHATPase_c
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage327 / 443 aa (73.8%)Merged over positioned domains only.
Domain description1 PocR,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa443 aa
Domain-by-domain annotation3 items
2 His_kinase#2
254-313 aa · 60 aa · 13.5% of protein
Raw token
His_kinase:254:0.00000000000957:313:60:803 HATPase_c#3
332-436 aa · 105 aa · 23.7% of protein
Raw token
HATPase_c:332:0.0000000162:436:113:109- Raw architecture: PocR:38:3.38e-48:199:162:162#His_kinase:254:0.00000000000957:313:60:80#HATPase_c:332:0.0000000162:436:113:109
- Domain description: 1 PocR,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span297280-299655Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_03575RefSeq proteinWP_117471805.1
Context group ID
GCF_003435225::NZ_QWGJ01000002.1::G00025Context members
DWY93_RS03570DWY93_RS03575
Partner locus tags
DWY93_RS03570DWY93_RS03575
Partner old locus tags
DWY93_03575DWY93_03580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117471805.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS03570Primary locus identifier stored in the genes table.
Old locus tagDWY93_03575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval297 280-298 611 nt1 332 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span297 280-299 655 ntGCF_003435225::NZ_QWGJ01000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span297 280-299 655 nt2 376 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
297 280 nt299 655 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS03570GCF_003435225#DWY93_RS03570
HKClassicCurrent focus
297 280-298 611 nt · Forward (+)
DWY93_RS03575GCF_003435225#DWY93_RS03575
RRunclassified
298 615-299 655 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS10210Use this link to inspect the representative gene detail.
PFAM architecturePocR + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2043930
Simplified PFAM architecture for HKOC_2043930
PFAM domain coverage: 330 / 443 aa (74.5%)
1 aa443 aa
PocRHis_kinaseHATPase_c
- Simplified architecture: PocR + His_kinase + HATPase_c
- Raw architecture: PocR[38-200] | His_kinase[251-313] | HATPase_c[332-435]
- Domain count: 3
- Matched identifier: HKOC_2043930
- Positioned domains: PocR 38-200 ; His_kinase 251-313 ; HATPase_c 332-435
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS10210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key