1 HisKA#1
352-418 aa · 67 aa · 9.6% of protein
Raw token
HisKA:352:0.000000000336:418:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS03465
Histidine kinase, Hybrid
Clostridium sp. AF28-12 · GCF_003435225
ClassHKTypeHybridLength700 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS03465Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length700 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage265 / 700 aa (37.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa700 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
460-568 aa · 109 aa · 15.6% of protein
Raw token
HATPase_c:460:3.77e-27:568:110:1093 Response_reg#3
611-699 aa · 89 aa · 12.7% of protein
Raw token
Response_reg:611:0.00000531:699:90:111- Raw architecture: HisKA:352:0.000000000336:418:67:64#HATPase_c:460:3.77e-27:568:110:109#Response_reg:611:0.00000531:699:90:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000002.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span275645-278499Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_03470RefSeq proteinWP_181968483.1
Context group ID
GCF_003435225::NZ_QWGJ01000002.1::G00024Context members
DWY93_RS03460DWY93_RS03465
Partner locus tags
DWY93_RS03460DWY93_RS03465
Partner old locus tags
DWY93_03465DWY93_03470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181968483.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS03465Primary locus identifier stored in the genes table.
Old locus tagDWY93_03470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval276 397-278 499 nt2 103 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span275 645-278 499 ntGCF_003435225::NZ_QWGJ01000002.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000002.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span275 645-278 499 nt2 855 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
275 645 nt278 499 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS03460GCF_003435225#DWY93_RS03460
RROmpR
275 645-276 337 nt · Forward (+)
DWY93_RS03465GCF_003435225#DWY93_RS03465
HKHybridCurrent focus
276 397-278 499 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS03465The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0769577
Simplified PFAM architecture for HKOC_0769577
PFAM domain coverage: 173 / 700 aa (24.7%)
1 aa700 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[353-418] | HATPase_c[463-569]
- Domain count: 2
- Matched identifier: HKOC_0769577
- Positioned domains: HisKA 353-418 ; HATPase_c 463-569
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS03465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key