1 Response_reg#1
4-116 aa · 113 aa · 40.1% of protein
Raw token
Response_reg:4:1.62e-36:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS02605
Response regulator, unclassified
Clostridium sp. AF28-12 · GCF_003435225
ClassRRTypeunclassifiedLength282 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS02605Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length282 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 282 aa (68.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa282 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
189-231 aa · 43 aa · 15.2% of protein
Raw token
HTH_AraC:189:0.000000106:231:43:423 HTH_AraC#3
244-279 aa · 36 aa · 12.8% of protein
Raw token
HTH_AraC:244:0.00000964:279:36:42- Raw architecture: Response_reg:4:1.62e-36:116:113:111#HTH_AraC:189:0.000000106:231:43:42#HTH_AraC:244:0.00000964:279:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84018-86634Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_02610RefSeq proteinWP_117469421.1
Context group ID
GCF_003435225::NZ_QWGJ01000002.1::G00023Context members
DWY93_RS02600DWY93_RS02605
Partner locus tags
DWY93_RS02600DWY93_RS02605
Partner old locus tags
DWY93_02605DWY93_02610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117469421.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS02605Primary locus identifier stored in the genes table.
Old locus tagDWY93_02610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval85 786-86 634 nt849 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 018-86 634 ntGCF_003435225::NZ_QWGJ01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span84 018-86 634 nt2 617 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 018 nt86 634 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS02600GCF_003435225#DWY93_RS02600
HKClassic
84 018-85 745 nt · Forward (+)
DWY93_RS02605GCF_003435225#DWY93_RS02605
RRunclassifiedCurrent focus
85 786-86 634 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS02605The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0594682
Simplified PFAM architecture for RROC_0594682
PFAM domain coverage: 192 / 282 aa (68.1%)
1 aa282 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[203-281]
- Domain count: 2
- Matched identifier: RROC_0594682
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 203-281 ; HTH_18 203-281
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS02605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key