1 dCache_1#1
171-280 aa · 110 aa · 18.4% of protein
Raw token
dCache_1:171:6.25e-16:280:114:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS02485
Histidine kinase, Classic
Clostridium sp. AF28-12 · GCF_003435225
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS02485Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage366 / 599 aa (61.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation4 items
2 HAMP#2
298-367 aa · 70 aa · 11.7% of protein
Raw token
HAMP:298:0.0000000000748:367:70:693 His_kinase#3
383-461 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:383:5.63e-35:461:79:804 HATPase_c#4
477-583 aa · 107 aa · 17.9% of protein
Raw token
HATPase_c:477:1.07e-16:583:109:109- Raw architecture: dCache_1:171:6.25e-16:280:114:195#HAMP:298:0.0000000000748:367:70:69#His_kinase:383:5.63e-35:461:79:80#HATPase_c:477:1.07e-16:583:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000002.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52369-55829Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_02490RefSeq proteinWP_117471737.1
Context group ID
GCF_003435225::NZ_QWGJ01000002.1::G00022Context members
DWY93_RS02480DWY93_RS02485
Partner locus tags
DWY93_RS02480DWY93_RS02485
Partner old locus tags
DWY93_02485DWY93_02490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117471737.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS02485Primary locus identifier stored in the genes table.
Old locus tagDWY93_02490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval54 030-55 829 nt1 800 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 369-55 829 ntGCF_003435225::NZ_QWGJ01000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span52 369-55 829 nt3 461 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 369 nt55 829 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS02480GCF_003435225#DWY93_RS02480
RRunclassified
52 369-54 009 nt · Forward (+)
DWY93_RS02485GCF_003435225#DWY93_RS02485
HKClassicCurrent focus
54 030-55 829 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435225#DWY93_RS02485The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1058347
Simplified PFAM architecture for HKOC_1058347
PFAM domain coverage: 470 / 599 aa (78.5%)
1 aa599 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[48-280] | HAMP[316-366] | His_kinase[383-461] | HATPase_c[477-583]
- Domain count: 4
- Matched identifier: HKOC_1058347
- Positioned domains: dCache_1 48-280 ; HAMP 316-366 ; His_kinase 383-461 ; HATPase_c 477-583
Cluster members and taxonomy
Representative gene: GCF_003435225#DWY93_RS02485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key