1 Response_reg#1
6-119 aa · 114 aa · 20.9% of protein
Raw token
Response_reg:6:2.01e-31:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY93_RS02480
Response regulator, unclassified
Clostridium sp. AF28-12 · GCF_003435225
ClassRRTypeunclassifiedLength546 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435225#DWY93_RS02480Stable P2CS identifier used across views.
GenomeGCF_003435225Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length546 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 546 aa (33.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa546 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
453-493 aa · 41 aa · 7.5% of protein
Raw token
HTH_AraC:453:0.0000000233:493:41:423 HTH_AraC#3
514-542 aa · 29 aa · 5.3% of protein
Raw token
HTH_AraC:514:0.00000621:542:29:42- Raw architecture: Response_reg:6:2.01e-31:119:114:111#HTH_AraC:453:0.0000000233:493:41:42#HTH_AraC:514:0.00000621:542:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435225::NZ_QWGJ01000002.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52369-55829Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY93_02485RefSeq proteinWP_117471736.1
Context group ID
GCF_003435225::NZ_QWGJ01000002.1::G00022Context members
DWY93_RS02480DWY93_RS02485
Partner locus tags
DWY93_RS02480DWY93_RS02485
Partner old locus tags
DWY93_02485DWY93_02490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117471736.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY93_RS02480Primary locus identifier stored in the genes table.
Old locus tagDWY93_02485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWGJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval52 369-54 009 nt1 641 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 369-55 829 ntGCF_003435225::NZ_QWGJ01000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435225::NZ_QWGJ01000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWGJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span52 369-55 829 nt3 461 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 369 nt55 829 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY93_RS02480GCF_003435225#DWY93_RS02480
RRunclassifiedCurrent focus
52 369-54 009 nt · Forward (+)
DWY93_RS02485GCF_003435225#DWY93_RS02485
HKClassic
54 030-55 829 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435125#DW677_RS01785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0079704
Simplified PFAM architecture for RROC_0079704
PFAM domain coverage: 190 / 546 aa (34.8%)
1 aa546 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-118] | HTH_18[466-542]
- Domain count: 2
- Matched identifier: RROC_0079704
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; HTH_18 466-542 ; HTH_18 466-542
Cluster members and taxonomy
Representative gene: GCF_003435125#DW677_RS01785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 305 241 · GCF_003435225
AssemblyASM343522v1 · Scaffoldhaploid
Genome composition3 514 663 bp · 48,5% GCClostridium sp. AF28-12
Signal transduction countsGenes 67 · HK 31 · RR 34CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key